LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00129	ATGCCTGCCTTGGCTTGTTGCGTGGACGCTGCAGCGCCTCCTGCCTACGCATTCGCCGCCGGTGACATCTCTTTCCCGGCGCCGGTTGATTTTTCCGGCGTAACTCCGGCAACGACCGACGACAACAACCGCTGGTCTCCGTCTCTCTCCTCCGCCCTCTACAGCATCGATGGCTGGGGAGGTCCTTATTTCGCCGTCAACTTCGCCGGGAACATCTCCGTGCGGCCACATGGTTCAGAGACGCTGTCTCACCAGGAAATTGATTTGCTGAAGATTGTGAAGAAGGCTTCAGAACCTAAATCTTACGGCGGTCTTGGCCTTCAGCTTCCTCTCCTTGTTCGGTTCCCTGACATTTTGAAAAACCGTTTGGAGTCCCTTCAATCGGCGTTCGAGTATGCTGTTGTGTCCGAGGGATACGAGTCTCATTACCAGGGGGTTTACCCTGTGAAATGCAACCAGGACCGGTTCGTTGTGGAAGACATCGTGAAATTCGGTTCATCGTTCCGGTTCGGTTTGGAGGCAGGGTCCAAACCAGAGCTTCTCCTTGCCATGAGTTGTTTATGCAAAGGCAATCCTGAAGCACTCGTCATTTGCAACGGCTTCAAGGATGCTGAGTATATTTCCCTCGCTCTGGTGGCGAGGAAGCTGGCTCTGAATACCGTGATTGTTCTTGAACAAGAGGAAGAGCTCGATTTGATCATTGATCTGAGCAGGAAGATGCGTATTCGTCCTGTGATTGGGATGCGAGCGAAGCTTCGGACCAAGCATTCAGGCCATTTTGGTTCCACATCAGGGGAGAAAGGAAAGTTTGGGCTCACAACAGCTCAGATTTTGAGGGTGGTGAAGAAGCTTGAACACGCTGGCATGCTGGATTGCCTGCAACTACTGCATTTCCATATAGGTTCTCAGATTCCTTCCACAACGTTCCTTGCAGATGGCGTTGGAGAAGCTGCACAGATCTATTGTGAACTGGTTCGACTCGGTGCTCACATGCGGGTCATAGATATTGGCGGTGGCTTGGGAATAGACTACGATGGTTCAAAATCAAGCGACTCTGATAACTCTGTTGGGTATGGTCTTCAAGAATATGCCACGGCGGTTGTTCGCGCTGTTCAATTTGTTTGTGACCGAAGGTCCATTAAACACCCTGTAATCTGCAGCGAGAGTGGTAGGGCAATCGTGTCTCACCATTCGGTGTTGATTTTTGAAGCTGTTGGTGCCAGCAGCTACGAAACGCCTTCTTCATTTTCCACGCTTGCACTGGAGAATTTGGTGGAGGGATTTTCAGAGGATGCTCGTGCCGATTATCGTAATCTCTCTGACGCGGCGATTCGTGGCGAGTACGATGCGTGCTTGCTTTACATGGAGGAGATGAAACAGAGATGCGTGGAGCAATTCAAGGAAGGGTGTTTGGGAATGGAACAGCTGGCAGCGGTGGAAGGGTTGTGTGATTTGGTGACGAAGGCGGTGGGGGCGGCGGAACCAGTTAGAAGGTACCACGTGAACCTTTCTGTGTTCACGTCGATTCCTGATGTGTGGAGCATTGATCAAGTGTTTCCCATTGTCCCGATTCATCGCTTGGACGAAAGGCCTTCCGTGAGGGGTATTCTCTCTGACTTGACTTGTGACAGTGATGGGAAGATTGATAAATTCATAAACGGAGAATCGAGCTTGCCGCTTCATGAGTTGGAAGGTGGAGGGTACTTTCTGGGAATGTTCTTGGGTGGGGCTTACGAGGAGGCGCTCGGTGGATTCCACAACTTGTTTGGTGGCCCTAGCGTTGTTCGGGTGTCACAGTGTGATGGTCCACACGGCTTCGCGGTGACGCGTGCGGTGTCAGGGCCTTCCTGTGGAGATGTCCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTTGAGACCCTCAGGCACCGTGCAAACGAGTTTGTGCATGATGATCTCAGCGCTGCGGCTCTCGCCACTGGCCTTGCACGTTCCTTCAACAACATGCCTTATCTGGTGCCGCTCTGTGCTGTTGATGGTGATGCTGATTCTGTGGAGTAG	2043	0.5213	MPALACCVDAAAPPAYAFAAGDISFPAPVDFSGVTPATTDDNNRWSPSLSSALYSIDGWGGPYFAVNFAGNISVRPHGSETLSHQEIDLLKIVKKASEPKSYGGLGLQLPLLVRFPDILKNRLESLQSAFEYAVVSEGYESHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNPEALVICNGFKDAEYISLALVARKLALNTVIVLEQEEELDLIIDLSRKMRIRPVIGMRAKLRTKHSGHFGSTSGEKGKFGLTTAQILRVVKKLEHAGMLDCLQLLHFHIGSQIPSTTFLADGVGEAAQIYCELVRLGAHMRVIDIGGGLGIDYDGSKSSDSDNSVGYGLQEYATAVVRAVQFVCDRRSIKHPVICSESGRAIVSHHSVLIFEAVGASSYETPSSFSTLALENLVEGFSEDARADYRNLSDAAIRGEYDACLLYMEEMKQRCVEQFKEGCLGMEQLAAVEGLCDLVTKAVGAAEPVRRYHVNLSVFTSIPDVWSIDQVFPIVPIHRLDERPSVRGILSDLTCDSDGKIDKFINGESSLPLHELEGGGYFLGMFLGGAYEEALGGFHNLFGGPSVVRVSQCDGPHGFAVTRAVSGPSCGDVLRVMQHQPELMFETLRHRANEFVHDDLSAAALATGLARSFNNMPYLVPLCAVDGDADSVE.	681

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca4g00129	680	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	328	341	IPR022657	-
Seca4g00129	680	Gene3D	-	414	495	-	-
Seca4g00129	680	SUPERFAMILY	Alanine racemase C-terminal domain-like	494	597	IPR009006	GO:0003824
Seca4g00129	680	PIRSF	ARGDC	33	667	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	NCBIfam	arginine decarboxylase	45	666	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	54	598	IPR009006	GO:0003824
Seca4g00129	680	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	147	165	IPR000183	GO:0003824
Seca4g00129	680	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	171	183	IPR000183	GO:0003824
Seca4g00129	680	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	576	589	IPR000183	GO:0003824
Seca4g00129	680	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	290	303	IPR000183	GO:0003824
Seca4g00129	680	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	385	404	IPR000183	GO:0003824
Seca4g00129	680	Gene3D	Alanine racemase	116	397	IPR029066	-
Seca4g00129	680	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	147	165	IPR022653	-
Seca4g00129	680	FunFam	Biosynthetic arginine decarboxylase	116	397	-	-
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	115	130	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	223	244	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	502	523	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	375	392	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	527	552	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	576	597	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	197	212	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	247	269	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PRINTS	Arginine decarboxylase signature	139	153	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	142	395	IPR022644	GO:0003824
Seca4g00129	680	CDD	PLPDE_III_ADC	113	597	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	PANTHER	ARGININE DECARBOXYLASE	1	667	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Seca4g00129	680	SUPERFAMILY	PLP-binding barrel	115	397	IPR029066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00129	Seca-Chr4	1950408	1952450	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00129	K01583		-	gmx:100793552	1068.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g00129	4	1950408	1952450	Seca4g00129	4	1950408	1952450	ECH