Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00124 ATGCCTGACTCAGGTTCCAAGTTAGAATGCTCTGCAGAAGTTATAAAAGACGATGATTTTGATGGAAAATCTGAACCTGATGTACTTTGTCCCCAGAAGAGAAGAAAAACAGAAGAAAATGATGGTCCTGAGGAGACAGATAATGAAGGTGTATGTGTTACTGATACTGAGCAAATTGTTGAAAGAAACTGCACAAAATCTGAACCAGAAGCAGAAACTGATACTATAACCCCGGAAACTGATCTAAGCCTGAAGTTGCACTCACGCGAAAAGAAGCTTATTGATTACCGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATATAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCGGATACTGTGGCAAGAACAGTTGAACTAATAGAACAAGAATGTACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCGGGATCAGCTCTTCTAACCAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCAGGCACAGTAGAAAAACCAATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGAAAGAATCGCATTGACTCTCTGATAGCAGACATAGGTTCATGGGGAGCCAGTGCAGTGACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGACTATATATACCAGTGTTCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATGTTTTCTCATTTGTTGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACTTGCATGATTGCCCGTGGTGCACTGATTAAGCCTTGGTTATTCACAGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGCGAGCGACTAAATATTCTCAAAGATTTTGTGCGATTTGGCCTTGAACACTGGGGTTCTGACACAAAAGGGGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTTAGGTACATACCAGTTGGTCTTTTGGATGTGGTTCCACAGCGAATAAACTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTTGAGACACTGATGGCCTCAGACTCTGCAGCTGACTGGATACGATTATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTACATTCGCCCCAAAGCATAAATCAAATGCTTATGATAGAGCTGAAAATGGCTAA 1356 0.4263 MPDSGSKLECSAEVIKDDDFDGKSEPDVLCPQKRRKTEENDGPEETDNEGVCVTDTEQIVERNCTKSEPEAETDTITPETDLSLKLHSREKKLIDYREKLYLAPLTTVGNLPFRRVCKVLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVEKPITVKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYIYQCSRKAPNTLQVVGNGDVFSFVDWNNHRTECPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNILKDFVRFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVVPQRINWRPPSYYGRDELETLMASDSAADWIRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00124 451 MobiDBLite consensus disorder prediction 17 42 - -
Seca4g00124 451 ProSitePatterns Uncharacterized protein family UPF0034 signature. 183 201 IPR018517 GO:0008033|GO:0017150|GO:0050660
Seca4g00124 451 Pfam Dihydrouridine synthase (Dus) 102 337 IPR035587 -
Seca4g00124 451 Gene3D Aldolase class I 95 337 IPR013785 -
Seca4g00124 451 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 59 445 - -
Seca4g00124 451 MobiDBLite consensus disorder prediction 17 49 - -
Seca4g00124 451 SUPERFAMILY FMN-linked oxidoreductases 99 412 - -
Seca4g00124 451 CDD DUS_like_FMN 99 334 IPR035587 -
Seca4g00124 451 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 95 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00124 Seca-Chr4 1855100 1860153 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00124 K05544 - gmx:100783494 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00124 4 1855100 1860153 Seca4g00124 4 1855100 1860153 ECH