Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00108 ATGGAGAGTAGTTCAGGGAACACCAAGAGGAAAAGTGGTGAGGTTTTGGATGGTTCCAACATTATGGAGTTGGTTGGAAATGAGAAAGTATTCAGCAACTTCGTGGACCATAAGTTTCATCAGTTGGATAAGGACAGAGATGGGAAGCTCTCTGTGAAGGAGCTTGAGCCTGCTGTAGCTGACATTGGTGCTGCTCTTGGTTTGCCTGCTCAGGGCACTAGTCCTGATTCTGATCACATCTACTATGAGGTGTTGAATGAATTCACACATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTATCAGACATTCTATTGGGCATGGCTGCTGGACTGAAGCGAGATCCAATTGTTATACTCCGTATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATGTTCTCTGAGACTGAGAACCCCAGTGGATCACTTCGTCAACATATAATTGAAGCTTTTGGGAGACTCACAGTTGATCGAGGAATTCCTCCTACATCAGATTCTTGGGTTTTTAACAATATTGTGGATCCTGCACTGCTTGCTCATGCTGGCCCTGCTTGGGATAAGGCAGTTACTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGTGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCTCACAGTGAAAACACCTTTGATGGAAGTGGCGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGAAAAGACGTTGAATTCAGCTTTAGAGAATATGCCAAAAGATAAAAACGGAAAAATATCAAAGGAGTATCTGCAGGTGGCACTAGAAGTGGTGTCTCCATCCGCTGGATTACCTCCTGTTGGTGCAATTGAAGAGATGGATAAGGTTATTAGTGAAGCATTTAAGATGGTGAATGCAGATGATAAGAAGATGGTTAACGAAGAGGAGTTCAAGAAAATTTTAACTGAAATATTGGGGAGTATTATGTTGCAGTTAGAGGGCAATCCCATAGCCGTGTCTTCAAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTTTTGCAACCAACTTCTAGTGAAACAGAGCATAACTGA 1119 0.4173 MESSSGNTKRKSGEVLDGSNIMELVGNEKVFSNFVDHKFHQLDKDRDGKLSVKELEPAVADIGAALGLPAQGTSPDSDHIYYEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFVNGPSYEAEMASMFSETENPSGSLRQHIIEAFGRLTVDRGIPPTSDSWVFNNIVDPALLAHAGPAWDKAVTQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGSGVKRLLSNKFELEKTLNSALENMPKDKNGKISKEYLQVALEVVSPSAGLPPVGAIEEMDKVISEAFKMVNADDKKMVNEEEFKKILTEILGSIMLQLEGNPIAVSSNSVVHEPLGSSSTLLQPTSSETEHN. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00108 372 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 126 350 - -
Seca4g00108 372 ProSitePatterns EF-hand calcium-binding domain. 43 55 IPR018247 -
Seca4g00108 372 SMART efh_1 34 62 IPR002048 GO:0005509
Seca4g00108 372 SMART efh_1 256 284 IPR002048 GO:0005509
Seca4g00108 372 SMART efh_1 302 330 IPR002048 GO:0005509
Seca4g00108 372 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Seca4g00108 372 Gene3D - 143 342 - -
Seca4g00108 372 Gene3D - 9 116 - -
Seca4g00108 372 Pfam EF-hand domain pair 38 104 IPR002048 GO:0005509
Seca4g00108 372 ProSiteProfiles EF-hand calcium-binding domain profile. 298 333 IPR002048 GO:0005509
Seca4g00108 372 ProSiteProfiles EF-hand calcium-binding domain profile. 252 287 IPR002048 GO:0005509
Seca4g00108 372 SUPERFAMILY EF-hand 38 341 IPR011992 -
Seca4g00108 372 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00108 Seca-Chr4 1556524 1561533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00108 7 370 EF-hand Containing Proteins AT4G38810 66.485 1.04e-173 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00108 - - gmx:100787083 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00108 4 1556524 1561533 Seca4g00108 4 1556524 1561533 ECH