Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05626 ATGTCTTTCTCAGCACCCAAGTTTGCTCAACGTCTCCCTCTTCCTCTCAGATCCAATGACAACAACCCTATGCCTTTCCAACCATTCACACCCTTCCTTGGATCCACTCACAAGCTTCGCTCCAATGCTCCCATTAAGCTTGCTCGTCCTCACAACCCTCGCTCCACTATTGCCTCCGTTTCCGATGCTGTCAAGGAGAAGAAGAAGAAGCTCAATTTGCCCGCCAATCTGCTTATTACAAAAGAGGAAGGCTTGGAGCTCTATGAAGACATGGTATTAGGCAGGGCCTTTGAAGACATGTGTGCCCAGATGTATTATAGAGGCAAAATGTTTGGTTTCGTTCACTTGTATAATGGTCAAGAAGCTGTGTCAACTGGATTCATCAAGCTTCTCAAGAAAGAAGACTATGTAGTGAGCACCTACCGGGACCATGTTCATGCACTGAGTAAAGGGGTCTCAGCACGTGCTGTAATGAGTGAGCTCTTTGGAAAGGCCACCGGATGCTGCCGAGGTCAAGGTGGATCTATGCATATGTTTTCAAAGGAGCATAATTTGGTTGGTGGGTTTGCTTTCATTGGCGAAGGAATTCCTGTGGCCACTGGGTTAGCATTTTCTGGTAAGTATAGAAGGGAGGTATTGAAAGAGGCAGGTGCTGATGATGTTACATTGGCATTTTTTGGAGATGGAACATGTAATAATGGGCAGTTCTATGAATGCCTAAACATGGCAGCTTTATGGAAATTGCCAATTGTGTTTGTGGTGGAAAACAATTTGTGGGCTATTGGGATGTCACATCTCAGGGCGACTTCAGATCCTCAGATATGGAAGAAAGGGCCAGCATTTGGAATGCCAGGGGTTCATGTCGATGGGATGGACGTTTTGAAGGTAAGAGAGGTGGCAAAGGAGGCTATTGAAAGAGCCAGACGAGGAGAGGGGCCAACTTTAGTAGAATGTGAAACCTATAGATTTAGAGGGCATTCATTAGCTGATCCTGATGAGCTTCGTGACCCTGCTGAGAAAGCACATTATGCTGGTAGGGATCCCATATCTGCACTGAAGAAATACATGATTGAGAACAAATTAGCCAGTGAACAGGAGTTGAAGATCATAGAGAAGAAGATTGATGAGGTCGTTGAGGAATCTGTTGAGTTTGCAGATGCAAGTCCCCTTCCACCCCGTAGCCAGCTTCTGGAGAATGTGTTTGCTGATCCCAAAGGTTTTGGACTTGGACCTGATGGCAGGTACAGATGTGAGGACCCAAAATTCACAGAAGGCACTGCTCATGTCTAA 1290 0.4597 MSFSAPKFAQRLPLPLRSNDNNPMPFQPFTPFLGSTHKLRSNAPIKLARPHNPRSTIASVSDAVKEKKKKLNLPANLLITKEEGLELYEDMVLGRAFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVSARAVMSELFGKATGCCRGQGGSMHMFSKEHNLVGGFAFIGEGIPVATGLAFSGKYRREVLKEAGADDVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAGRDPISALKKYMIENKLASEQELKIIEKKIDEVVEESVEFADASPLPPRSQLLENVFADPKGFGLGPDGRYRCEDPKFTEGTAHV. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05626 429 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 81 402 IPR017597 GO:0004739|GO:0006086|GO:0043231
Seca2g05626 429 Pfam Dehydrogenase E1 component 90 391 IPR001017 GO:0016624
Seca2g05626 429 CDD TPP_E1_PDC_ADC_BCADC 87 385 - -
Seca2g05626 429 FunFam Pyruvate dehydrogenase E1 component subunit alpha 47 409 - -
Seca2g05626 429 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 404 IPR029061 -
Seca2g05626 429 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 54 412 - -
Seca2g05626 429 Coils Coil 360 380 - -
Seca2g05626 429 Gene3D - 48 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05626 Seca-Chr2 142535093 142538260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05626 2 429 Acyl Lipid Metabolism Gene Families AT1G01090 78.719 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05626 K00161 - gmx:100802573 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05626 2 142535093 142538260 Seca2g05626 2 142535093 142538260 ECH