Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05601 ATGCCCATGATTCTCTTTCTCTGCACCCTCGCCCTCGCCTTCTTCTTTTTATTCTTAATTCGGGCGATGCTGCTCGAAACGGGGCGCGCCAAGAAGCTATGGAGAACCGTTGAAGATTGGTTCCACGTGTACCAGTTCTTCAAAGTCCCAGAACTCAACGAAAGCATGCAACACAATCACCTTTACACAAAGGTCTCCCTCTACTTGCATTCCCTCCCTTCCCTCGAAGACTCTGACTCCATCAATCTCCTTACTGGGAAGAAGCAAAACGACGTCGTCCTCTGCCTCGCCCCAAACCAAACCATCCAGGACCATTTTCTCGGAGCCACCATCTTCTGGTTCAACCAAACCGAACCGAACCACAACAGAACCTTCGTTCTGAAGATCAGAAAAGTTGACAAGCGCCGAATCCTCCGCCCTTATCTCCAGCACATTCACGCGGTCGCCGACGAAATCGAACAGCAAGGGAAGCGCGATTTGCGTCTCTTCATGAACGCCGATTCCTTCGGAAGGTGGAGGTCCGTTCCTTTCACACACCCGTCCACGTTCGACACCATCACCATGGAGCCTGATCTCAAGAACAGAGTCAAATCCGATCTCGAATCGTTCCTCAAAGCCAAACAATACTACCACCGGTTGGGGCGGGTCTGGAAACGGAGCTTCCTCTTGTACGGTTCCTCCGGCACCGGAAAATCGAGCTTCGTTGCCGCCATGGCCAATTTCCTCTGCTACGACGTGTACGACATCGACTTGTCCAAGGTTCCTAGCGATTCAGATCTCAAATTCCTCCTCCTACAAACGACGCGGAAATCGATCGTGGTCATCGAGGACCTGGACCGGTTCCTGCTGGAGAAATCAACGACGGTGAGCTCGTCGGGGATACTGAACTTCATGGATGGGGTTTTGAGTTCGTGCTGTGGCGAAGAGAGAGTAATGGTATTCACGATGAACAGCAAGGAGCAAGTGGATCCGAATCTGCTTCGGCCGGGTCGGGTGGATGTCCATATCCATTTCCCGCTTTGCGATTTTTCGGCGTTTAAGACGCTGGCGAGCAGCTACCTTGGGGTGAAGGACCACAAGCTGTTCCCTCAGGTGCAGGAGATTTTCCAAAACGGAGCGAGTTTGAGCCCCGCCGAAATCGGTGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATCAAATCAGTCATCACCGCTTTGCAAACGGACGGCGATGGCAGGGGGTGCGGGATGATCGAACGGCATACAGGGGATGATGAATTGGATGAGGGTCTCCATACGGTTAAGGATATGCGGAAAATGTACGGTTTTTTCAGATTGAGGGTTGCTAGAAGATCTTCGTCGTCCAATAGTTCCTTGGCAGCAAGCCCTTTGCGATGA 1386 0.5245 MPMILFLCTLALAFFFLFLIRAMLLETGRAKKLWRTVEDWFHVYQFFKVPELNESMQHNHLYTKVSLYLHSLPSLEDSDSINLLTGKKQNDVVLCLAPNQTIQDHFLGATIFWFNQTEPNHNRTFVLKIRKVDKRRILRPYLQHIHAVADEIEQQGKRDLRLFMNADSFGRWRSVPFTHPSTFDTITMEPDLKNRVKSDLESFLKAKQYYHRLGRVWKRSFLLYGSSGTGKSSFVAAMANFLCYDVYDIDLSKVPSDSDLKFLLLQTTRKSIVVIEDLDRFLLEKSTTVSSSGILNFMDGVLSSCCGEERVMVFTMNSKEQVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGMIERHTGDDELDEGLHTVKDMRKMYGFFRLRVARRSSSSNSSLAASPLR. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05601 461 Gene3D - 173 336 IPR027417 -
Seca2g05601 461 Gene3D - 337 402 - -
Seca2g05601 461 Pfam ATPase family associated with various cellular activities (AAA) 222 340 IPR003959 GO:0005524|GO:0016887
Seca2g05601 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 401 IPR027417 -
Seca2g05601 461 SMART AAA_5 217 342 IPR003593 GO:0016887
Seca2g05601 461 PANTHER BCS1 AAA-TYPE ATPASE 37 403 - -
Seca2g05601 461 Pfam Domain associated at C-terminal with AAA 33 113 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05601 Seca-Chr2 142317000 142318385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05601 176 384 Miscellaneous Gene Families AT5G53170 24.779 5.66e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05601 - K08900 gmx:100776680 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05601 2 142317000 142318385 Seca2g05601 2 142317000 142318385 ECH
Seca2g05601 2 142317000 142318385 Seca2g05601 2 142317000 142318385 PCT