Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05598 ATGGAAAGCAACCAAACCACCATGGAAATGGAAGCAGAGTTCGAGGATTTGTTGCCTGTGATGGTAGAGAAGCTTGATGTGGAGGCATTTGTGTCTGAATTATGTGGGGGTTTCAAGCTTCTAGCAGACTCAGAAATGGGTTTGATCACATGTGAGAGTCTGATGAGAAATTCAGCTCTGCTGGGTATGGATGGGATGAGCAAAGAGGATGCAGAGTCCATGGTTAGACATGGCGATCTTGATGGGGATGGCAAGCTAAATGAGACCGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATGATGCAAGATGCTGAGGCATGGCTTCACAAGGCAATTGAAAAGGAGCTCAACAAATCCTCAACAACTTAA 375 0.4613 MESNQTTMEMEAEFEDLLPVMVEKLDVEAFVSELCGGFKLLADSEMGLITCESLMRNSALLGMDGMSKEDAESMVRHGDLDGDGKLNETEFCILMVRLSPGMMQDAEAWLHKAIEKELNKSSTT. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05598 124 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Seca2g05598 124 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Seca2g05598 124 PANTHER CALCIUM-BINDING PROTEIN KIC 8 120 IPR044205 GO:0005509
Seca2g05598 124 Gene3D - 11 124 - -
Seca2g05598 124 Pfam EF-hand domain pair 47 97 IPR002048 GO:0005509
Seca2g05598 124 SUPERFAMILY EF-hand 28 105 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05598 Seca-Chr2 142293277 142293651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05598 6 118 EF-hand Containing Proteins AT2G46600 69.912 6.77e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05598 K24345 - gmx:100787197 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05598 2 142293277 142293651 Seca2g05598 2 142293277 142293651 ECH
Seca2g05598 2 142293277 142293651 Seca2g05598 2 142293277 142293651 PCT