Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05570 ATGGCACCAAGAAACAGTCGTGGAAAGGCCAAGGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCAGTTGTAGTGGATATCACTGTGAACCTCCCCGATGAAACTCATATTATTCTCAAGGGAATATCAACGGACAGAATAATAGATGTTCGTCGGCTTTTAACGGTGAATACAGAGACTTGTCATATTACCAAATTTTCCCTGTCACATGAGGATACGGTGGACGTGTTCGCACTGAAACCATGCGTCCTCACTTTAGTCGAAGAGGATTATGACGAGGATGGAGCAGTGGCCCACGTCAGACGGGTGCTGGACACGGTGGCCTGCACCACCAACTTCGGTCCGTCGTCGGCGGCAGCGGCAGCGAAAAATGGAAACTCTGAAGCTCCGGCGGCCGAGGTGGTTGACGGAGACTGCGAGTTGTCCCCTAGGATCGGAAGCTTCTACGAGTTTTTCTCTCTTTCCCATCTCACTCCCCCTCTCCACTATATAAAAAAGACAGTGAGGCGACAAGTTTCAGACATATCAGAGGCGGATCATTTCTTCTCCCTTGATGTGAAGCTTTGTAATGGGAAAGTGGCGCACGTTGAAGCTTGCAGAAAGGGATTTTACAGTGTTGGAAAACAGAGGATTTTTAGTCATAACCTTGTTGATTTGTTACGACGGCTCAATAGAGCTTTTGATACTGCTTATGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGTTTGGGAATCTCCCTTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTGTTGCTGCACAATCACTGTCAGTATTCCCTCCCCTTCCCGTAGAGGATGAAATTTGGGGAGGAAATGGCGGTGGTCTAGGAAGGGATGGAAAGTTTGATTTGCTTCCTTGGGCCAATGAGTTTTCATTTATTGCATCCATGCCTTGCAAGACAGCAGAAGAAAGGCAAGGTCGTGATAGAAGAGCATTCCTTCTCCACACCCTCTTTGTTGATGTTGCTATTTTCAGAGCTATTAAGGCTGTTAAACATGTTATGGGAGAGCCACATTTAAGCTGCTCAGTTACAGAAAATGATATTCTTCACACTGAGAGAGTAGGTGACTTGAGTATCAGAGTCTTGAAGGATGCTTCTGTTGCCAGCTGTAAGGTTGATACCAAAATTGATGGAGTTAAAGCTACTGGAGTAGATAAAAATGATCTAGTAGCCCGAAATCTACTGAAAGGAATTACTGCTGATGAGAATACTGCAGCCCATGATATTACCACATTAGGTGTTATTATTGTAAGATATTGTGGTTATGTGGTTGTTGTGAAAGTCGAGGGTGGAGAAAATGAAAATTCCAACTCTCCATCTTATCAAAGTATCGAATTGCTTGATCAGCCAGAGGGTGGTGCCAATGCACTCAACATTAATAGTTTGAGATTACTCCTTAACTCAACACACTCAGAGAAGAACAGACCAGTGACTCAGATGCAAATGCCTGAGACTGAAGATCTTGGAGTTTCCCATGCTTTTGTGGAGAGGCTTATTAGAGAAAGCCTTTCTAAGATTGAGGAAGAGGAACCCAGTTTGGACAATTTCATAAGATGGGAACTTGGAGCCTGTTGGATACAACATTTGCAAGACCAAAACAATACAGAAAAGGATAAGAAACCATCTTTGGATAAGGCTAAGAATGAAATGAAGGTTGAGGGGCTAGGGAAACCCCTTAAACCCCTCAAGAGTAGTAAAAATAAATCTGATCTAGGTAATGCTAAATTGTCATCTGAAAACTCCAAATCTCATCTGTCATGTGTTATTGGGGAGCCTGAGAGTGCCCCATTGCCCTTAGTAGAATTCCAGCATGAAACTGCAGCAGCAGAAAATGAGCTTGTGCTGAAGGGGATGTTATCTGAAGCAGCTTTTACTCAATTAAAAGAATCAGGAACTGGACTTCACTGCAAGTCAATGCAAGATCTAATTGACTTGTCTCAGAAATATTACACAGACGTTGCTCTCCCAAAGCTGGTAGCAGATTTTGGCTCATTGGAACTCTCTCCTGTTGATGGACGCACCTTAACTGATTTTATGCATACAAGGGGTCTACGTATGCGTTCTCTTGGACATGTTGTCAGTGCTCTGAACTTGTCTTATTCACATTATGTAGCTGTCAAGCTTTCAGAAAAACTATCACATGTACAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCTTACAGGCAGTGATTGCTGTTGTTGACAAGGAGAAAATGGCTACATCAATAGCTGTTGCATTGAACTTGCTGCTTGGTGTGCCTGAAAATAGAGGATTAGATAAGTCATGCAAACTCCACCCCCTTGTGTGGAAATGGCTAGAGGTGTTTCTGAAGAAGCGATTTGACTGGGAAATTAGCAGCTTGAATTACAATGGCGTGAGGAAGTTTGCGATTTTGCGTGGCTTATGTCATAAGGTTGGCATTGAGCTTGTTCCAAGGGATTTTGATTTGGATTCTCCAATGCCCTTCCATAGATCTGATATTGTCAGCTTGGTCCCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCTTAGAGTCATCAAAAACAGCTTTAGACAAGGGTAAGCTTGAAGATGCTGTTACCTATGGGACAAAGGCTCTTGCCAAGCTTGTAGCGGTTTGTGGCCCCTATCATCGGATGACAGCAGGAGCATACAGCTTACTTGCTGTAGTTCTATATCATACTGGAGACTTCAATCAGGCTACCATTTATCAACAAAAAGCTCTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCAGATACTATGAAGAGTTATGGGGATCTTGCAGTTTTCTACTACAGACTTCAACACACAGAGCTGGCTCTGAAGTATGTAAAGCGCGCTTTATATCTTCTGCATCTAACCTGTGGCCCATCTCATCCAAACACGGCCGCAACATACATTAATGTGGCTATGATGGAGGAAGGTCTGGGAAATGTACATGTTGCTCTCAGATATCTTCATAAAGCTTTAAAGTGCAACCAGAGGTTACTTGGTCCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCTTTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCAGATGACTTGAGGACACAGGATGCTGCTGCTTGGCTTGAATATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCACGGAATGGTACTCGAAAGCCTGATACATCAATTGCTAGCAAAGGCCACCTAAGTGTGTCAGATTTGCTTGACTACATTAATCCTAATCATGATGCCAAAGGGAGAGATGTGGCTGTAAAGAGAAGAAGCCAGGTAACAAAGGTGAGGATGAAATCCTGCCAGAACATTGGCTCAGCAAGTTCTGATGAGTCATCGAAAGAAACTCCAAAAGAGACTTCAGATGAAGAAATACTCATACCTGGACCAGGTAGCAGTGCAGATTCTGAGCAGGAGACCAGCTCTGGACCTGATTCAGAACAGACCTTTTTAGAAAAGACCTCCTATGAAAAGCCACAAATTTTGGGTGAAATATTGTCTGAAGCACATGCTGATGGAGAGGATGGATGGCAACCTGTTCAACGGCCAAGATCATCCAGTTCATATGGCCAGCGACTGAAGCAGAGACGAGCAACAATTGGCAAAGTTTATTTTCAGAAGAAGAATGTGGAGTCTGATACAGACTATTCTTATGTAAGGAGTACTAACCAGAACAGTAGGTATTACTCTTTGAAGAAGCGAACAATATCCCATGGGGTTTATACAGATAATCATACTGTAAACACAGCCCAAGGTACTAAATTTGGAAGGAAAGTGGTCAAAGCTGTTACATACAGGGTCAAGTCCATGTCTGCAGCTAATAAGACTACTGCAAAGGATCCATCAGAAATTGATGACAAACTATACAGTTCTTGTTCAGAACTTGGTTCAAGTTCATCGCCAAATGATATTAATCCGGTAAAGACTTCTACAGTTAGTCTCGGGAAATCTCCTTCATACAAGGAAGTAGCATTGGCTCCTCCTGGGACAATTTCCAAGTTGCAGGTCTATAACCCTCAAAGTGAGATTCCTGTTAGGCATGACTTTGGTGTTGGTAAACATGAAGAGGAAGCACACGCAAATTCTAATCCAAGCCTGGAAGAGGTAAAAACTACACCAGAAGAAAAGGATGGAGATTCTTTGTCAGATTCTGTTGATGATTCACCAGATACTAAAGTTTCTGAGGAGAAAGAAGAAACCCAGTTTACTGTTGCTGTGCAAGGTAATTTTGAGGATGCTAAGGGGCTTGAATTGGGGGATGTTGGGCCTCATGAAGCAGTTGATAATATCATAATGATTGATGCAGGGGAGGATTTTGTGGATTCTCACAAACTAGAACTTGACACAAATAACTCTGGCCGTTTTGAATTCCCCAATAATACTGATGCCATCTCACAAGAAGGTGAAGATTTACAGGTCAGTATATCTCTATCAAGTCAGGGTGATGCCCAGGGCATGCCATATAAGAAGTTATCTGCGTCTGCAGCTCCATTCAACCCATCATCAGGCATTCCACGTGCTGCACCTGTTGCCATGAACATAACTCATCCTTCTGGTCCTGGTGCTGTTGTTCCACCCATTGGCCCCTGGCCAGCAAATATGAATGTTCACCATGGACCTGCTACCATGTTACCTGCAGTTACCCCGATGTGTACTTCTCCGCACCATGCATACCAATCACCTCCTCCAACTCCAAACATGATACAACCATTGCCATTCATGTATCCTCCTTATACTCAACCTCAATCAATACCAACCAACAACTTTCCTGTTACTACCCGTGCTTTTCATGTCAATCAGTTCACGTGGCAATGTGATATGAACCCAACTGTATCTAAATTTGGTCCACATGCTGTCTGGCCTGGTTGTCATCCTGTGGAATTTCCTCTTCCAGCACCTGTCACCAAACCAATCCCTGATCCAATTTTGGAACCACAGAAACACACTCATGTTTCTAACAGTCCAAGTTCAGCTTTTGTTCTACCGGAGGGCATTGATAATGTCTGTGAGAAAGAGGTGAAAGCTCTAGAATCAGAGAATAGTGAAGATGAAGTGGGTAGAGTTCAGTCAGAAAGTGTAAAGGAAAATGGTAATCCTAATTTTCATGGGTCTGAAAATGTTGGGAACAAACCAAATCATGACATTAGCTTGAATAACAACAATAGCAGAAGTGAAAAGAACATGGATGATGAGAAAACCTTCAGCATTTTGATTAGAGGAAGAAGAAACCGGAAGCAGACTCTCAGAATGCCAATAAGTTTGCTAACTAGACCCAATAGCTCGCAGTCATTTAAGGTTGCTTATAACCGTGTAGTTAGAGGAAGTGATTTTCCCAAGTCCATCAACTTGTCTTCTAGTAAAGATTGTATAGCTACTGCATAA 5514 0.4298 MAPRNSRGKAKGEKKKKEEKVLPVVVDITVNLPDETHIILKGISTDRIIDVRRLLTVNTETCHITKFSLSHEDTVDVFALKPCVLTLVEEDYDEDGAVAHVRRVLDTVACTTNFGPSSAAAAAKNGNSEAPAAEVVDGDCELSPRIGSFYEFFSLSHLTPPLHYIKKTVRRQVSDISEADHFFSLDVKLCNGKVAHVEACRKGFYSVGKQRIFSHNLVDLLRRLNRAFDTAYDDLLKAFSERNKFGNLPYGFRANTWLVPPVAAQSLSVFPPLPVEDEIWGGNGGGLGRDGKFDLLPWANEFSFIASMPCKTAEERQGRDRRAFLLHTLFVDVAIFRAIKAVKHVMGEPHLSCSVTENDILHTERVGDLSIRVLKDASVASCKVDTKIDGVKATGVDKNDLVARNLLKGITADENTAAHDITTLGVIIVRYCGYVVVVKVEGGENENSNSPSYQSIELLDQPEGGANALNINSLRLLLNSTHSEKNRPVTQMQMPETEDLGVSHAFVERLIRESLSKIEEEEPSLDNFIRWELGACWIQHLQDQNNTEKDKKPSLDKAKNEMKVEGLGKPLKPLKSSKNKSDLGNAKLSSENSKSHLSCVIGEPESAPLPLVEFQHETAAAENELVLKGMLSEAAFTQLKESGTGLHCKSMQDLIDLSQKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVSALNLSYSHYVAVKLSEKLSHVQSLCIHEMIVRAFKHILQAVIAVVDKEKMATSIAVALNLLLGVPENRGLDKSCKLHPLVWKWLEVFLKKRFDWEISSLNYNGVRKFAILRGLCHKVGIELVPRDFDLDSPMPFHRSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDTSIASKGHLSVSDLLDYINPNHDAKGRDVAVKRRSQVTKVRMKSCQNIGSASSDESSKETPKETSDEEILIPGPGSSADSEQETSSGPDSEQTFLEKTSYEKPQILGEILSEAHADGEDGWQPVQRPRSSSSYGQRLKQRRATIGKVYFQKKNVESDTDYSYVRSTNQNSRYYSLKKRTISHGVYTDNHTVNTAQGTKFGRKVVKAVTYRVKSMSAANKTTAKDPSEIDDKLYSSCSELGSSSSPNDINPVKTSTVSLGKSPSYKEVALAPPGTISKLQVYNPQSEIPVRHDFGVGKHEEEAHANSNPSLEEVKTTPEEKDGDSLSDSVDDSPDTKVSEEKEETQFTVAVQGNFEDAKGLELGDVGPHEAVDNIIMIDAGEDFVDSHKLELDTNNSGRFEFPNNTDAISQEGEDLQVSISLSSQGDAQGMPYKKLSASAAPFNPSSGIPRAAPVAMNITHPSGPGAVVPPIGPWPANMNVHHGPATMLPAVTPMCTSPHHAYQSPPPTPNMIQPLPFMYPPYTQPQSIPTNNFPVTTRAFHVNQFTWQCDMNPTVSKFGPHAVWPGCHPVEFPLPAPVTKPIPDPILEPQKHTHVSNSPSSAFVLPEGIDNVCEKEVKALESENSEDEVGRVQSESVKENGNPNFHGSENVGNKPNHDISLNNNNSRSEKNMDDEKTFSILIRGRRNRKQTLRMPISLLTRPNSSQSFKVAYNRVVRGSDFPKSINLSSSKDCIATA. 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05570 1837 Gene3D Tetratricopeptide repeat domain 977 1106 IPR011990 GO:0005515
Seca2g05570 1837 Gene3D Tetratricopeptide repeat domain 863 976 IPR011990 GO:0005515
Seca2g05570 1837 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 859 1109 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1214 1237 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 544 590 - -
Seca2g05570 1837 Pfam Tetratricopeptide repeat 987 1061 - -
Seca2g05570 1837 Pfam Tetratricopeptide repeat 903 973 - -
Seca2g05570 1837 CDD CLU-central 681 834 IPR033646 -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1735 1767 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1398 1444 - -
Seca2g05570 1837 SUPERFAMILY TPR-like 869 1057 IPR011990 GO:0005515
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1720 1775 - -
Seca2g05570 1837 ProSiteProfiles TPR repeat profile. 904 937 IPR019734 GO:0005515
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1336 1358 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 544 568 - -
Seca2g05570 1837 Pfam Translation initiation factor eIF3 subunit 135 679 833 IPR033646 -
Seca2g05570 1837 SMART tpr_5 904 937 IPR019734 GO:0005515
Seca2g05570 1837 SMART tpr_5 988 1021 IPR019734 GO:0005515
Seca2g05570 1837 SMART tpr_5 946 979 IPR019734 GO:0005515
Seca2g05570 1837 ProSiteProfiles Clueless (Clu) domain profile. 276 552 IPR025697 -
Seca2g05570 1837 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1425 IPR027523 GO:0006996
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1398 1443 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1720 1734 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1140 1155 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1177 1195 - -
Seca2g05570 1837 MobiDBLite consensus disorder prediction 1122 1195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05570 Seca-Chr2 142021744 142033059 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05570 K03255 - gmx:100784117 2623.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05570 2 142021744 142033059 Seca2g05570 2 142021744 142033059 ECH