Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05546 ATGTTAGAGAAAGTGGAAGAGTTTAACATGGACAAAGTTATAGAAGAATTTGAGTCACTGACAAAGGATCCAGAAAGGGTTCAGAGGGAAACGCTCAAAAGAATTTTGGAGGATAACGCATCCGCTGAATATTTGCAGAATTTGGGTCTTAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCACTGGTTACTCACAAAGAATTGGAACTTTTTATCTACAGAATTATTGATGGGGATGCTTCTCCTATTCTCACCGGAAAACCCATCACAACTATGTCTTTAAGTTCTGGCACTACCCAGGGGAAGCCAAAATATGTACCATGGAATGATGAATTGTTTGAAACCACAATGCAGATATATCAGACCTCTTTTGCCTTTAGGAACAGAGAATTTCCTATAAAAAATGGGAAGGCTTTAAACTTTATATACGGTAGCAAACAGTTCAAAACAAAAGGGGGTCTTGTAGCTAGAACTGCTACAAGCAATGTGTTTCGCAATCCAAGTTACAAACATGCAATGAAAACACTGCAATCCCAATGCTGCAGCCCAGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTATACTGCCATCTGTTATGTGGGCTGATTTTCCGGGAGGAAGTTCAGTTAGTGTCTTCTACATTTGCGCATAGCATTGTCCATGCTTTTAGGACCTTTGAACTGGTGTGGGAAGAGCTCTGTAGTGATATCAGAGAAGGGGTTCTTAGCAGCAGAGTCACAGTTCCATCCATTAGAATGGCCATGTCTAAACTGCTGAAACCAAACCCAGAATTAGCCAACCTGATCCAAAAAAAATGTATGGGGTTGAGCAACTGGTATGGGTTAATACCAGAGCTTTTTCCAAATGCTAAGTACATTTATGGCATAATGACTGGGTCAATGGAGCCATACTTGAAAAAACTGAGGCACTATGCTGGGGAGCTGCCTTTGTTGACTGCTGACTATGGATCTTCTGAAGGGTGGATAGCTGCAAATGTGAACCCAAAACTTCCCCCTGAATCCGCCACTTATACTGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTTACACAGCTTGAGAACGCTAAGGGAGACCATACTTTCCTCTGCATTGATCCTCAGCCAGTGGGCCTAACTCAAGTGAAGGTTGGTGAAGAGTATGAAATTGTTATGACCAATCCAGCAGGGTTGTATCGGTATAGGCTAGGGGATGTGGTGAAGGTTATGGGATTCCATAACTCAACTCCAGAACTGAAATTTGTTCGCCGAAGCAGTCTTCTACTGAACATCAACATTGACAAGAACACAGAGAAGGATTTACAGTTAGCTGTGGAAGCAGCAGGCAAGTTGTTAGCAGAGGAGAAATTGGAAGTAGTTGATTTCACTAGCCATGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGTGGAGAAGCAAGTGAAGAAGTACTTGGTGAATGCTGCAACTGTTTGGACAAGTCTTTCATTGATGCAGGCTACACCAGCTCTCGCAAAGTAAACTGCATTGGGGCCCTTGAACTCCGAGTTGTTAGGAGGGGAACATTCCAGAAAATTCTTGATCATTACCTCGGATTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTAGGTACTATAAACAGCAAAGTGTTGCAAATCTTGAGTGAAAATGTAGTGAAGAGCTACCTCAGTACTGCTTTCAATTAA 1749 0.4214 MLEKVEEFNMDKVIEEFESLTKDPERVQRETLKRILEDNASAEYLQNLGLNGRTDPESFKACVPLVTHKELELFIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELFETTMQIYQTSFAFRNREFPIKNGKALNFIYGSKQFKTKGGLVARTATSNVFRNPSYKHAMKTLQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVQLVSSTFAHSIVHAFRTFELVWEELCSDIREGVLSSRVTVPSIRMAMSKLLKPNPELANLIQKKCMGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYAGELPLLTADYGSSEGWIAANVNPKLPPESATYTVLPHIGYFEFIPLTQLENAKGDHTFLCIDPQPVGLTQVKVGEEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFVRRSSLLLNINIDKNTEKDLQLAVEAAGKLLAEEKLEVVDFTSHVDLSKEPGHYVIFWEISGEASEEVLGECCNCLDKSFIDAGYTSSRKVNCIGALELRVVRRGTFQKILDHYLGLGTAVSQYKTPRCVGTINSKVLQILSENVVKSYLSTAFN. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05546 582 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 7 581 IPR004993 -
Seca2g05546 582 Pfam GH3 auxin-responsive promoter 16 557 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05546 Seca-Chr2 141840456 141846292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05546 17 579 EF-hand Containing Proteins AT1G23160 39.619 1.42e-138 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05546 K14506 - gmx:100794598 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05546 2 141840456 141846292 Seca2g05546 2 141840456 141846292 ECH
Seca2g05546 2 141840456 141846292 Seca2g05546 2 141840456 141846292 PCT