Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05545 ATGGCTTCGGAGACGAAGATCGTCAATCTGGCCGAGGAGGCGAAGCTCGCTCGAGAAGGCGTCAAGGCTCCCAGCTATGCTTTTACCAGCATCTGCAAGTCCCTCGTCGCCGGTGGAGTCGCCGGTGGAGTATCACGAACGGCAGTTGCTCCGCTGGAACGGTTGAAAATTTTGCTACAGGTCCAGAATCCCCACAACATAAAATACAATGGAACAATTCAAGGTCTTAAGTATATATGGAGAACTGAAGGTTTTCGTGGACTGTTCAAAGGGAATGGTACTAATTGTGCTCGGATTGTCCCTAATTCTGCTGTGAAGTTCTTTAGCTACGAGCAAGCTTCCAATAAATGGATGCAATTTTGTCTAAAATGTTTCAGTAATAAAACCCGTTGTTTGTCTAAGTATATTTTTCCTGTACTTTTGGCAGAGGATGCTCGACTGACTCCTGTTTTACGTCTTGGTGCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGGATAACTGTACAGACAGAGAAGTCCCCATATCAATACAGAGGAATGTTCCATGCTCTGTCAACTGTGCTAAGGGAAGAAGGCCCACGTGCTTTATATAAAGGCTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTATATGAGTCTTTGAAAGATTGGTTAATAAAATCCAAACCATTTGGTTTAGTTCAAGATTCTGAGTTGAGTGTAACAACTCGCCTGGCATGTGGTGCTGCAGCTGGAACTGTTGGACAAACTATTGCTTACCCTCTTGATGTTATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTGCTTCTGTTGTAACTGGTGATGGAAGAGGCAAGGTACCACTTGAATACACGGGCATGGTTGATGCATTTAGGAAAACTGTTCGGTATGAGGGATTTGGCGCATTATACAAGGGTCTGGTGCCCAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCGTTTGTATCATATGAGGTGGTGAAGGACATTTTAGGAGTAGAGATCAGAATATCAGACTGA 1083 0.4469 MASETKIVNLAEEAKLAREGVKAPSYAFTSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASNKWMQFCLKCFSNKTRCLSKYIFPVLLAEDARLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKPFGLVQDSELSVTTRLACGAAAGTVGQTIAYPLDVIRRRMQMVGWNHAASVVTGDGRGKVPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVSYEVVKDILGVEIRISD. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05545 360 SUPERFAMILY Mitochondrial carrier 30 347 IPR023395 -
Seca2g05545 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 147 235 IPR018108 -
Seca2g05545 360 PANTHER SOLUTE CARRIER FAMILY 25 30 354 - -
Seca2g05545 360 Pfam Mitochondrial carrier protein 148 239 IPR018108 -
Seca2g05545 360 Pfam Mitochondrial carrier protein 30 117 IPR018108 -
Seca2g05545 360 Pfam Mitochondrial carrier protein 249 352 IPR018108 -
Seca2g05545 360 Gene3D Mitochondrial carrier domain 27 354 IPR023395 -
Seca2g05545 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Seca2g05545 360 FunFam Mitochondrial substrate carrier 27 354 - -
Seca2g05545 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 351 IPR018108 -
Seca2g05545 360 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Seca2g05545 360 PRINTS Mitochondrial carrier protein signature 259 281 IPR002067 GO:0055085
Seca2g05545 360 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Seca2g05545 360 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085
Seca2g05545 360 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05545 Seca-Chr2 141810002 141816005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05545 35 355 EF-hand Containing Proteins AT5G51050 37.267 2.48e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05545 K14684 - gmx:100777048 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05545 2 141810002 141816005 Seca2g05545 2 141810002 141816005 ECH
Seca2g05545 2 141810002 141816005 Seca2g05545 2 141810002 141816005 PCT