Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05506 ATGGCAACTTTGGGTGCACACTCAATGTTGTTATACCATCAGGAAGGGACAGGCACTCCCAATGTATGTATAAAAGTAGGCCTCAATGATGTAAGGTTTCACAGAACAACAAGGTTTCAATATCCTCGTAGTGTTGTTGTGCTCAAAGTTTTGTCCACCACCAGAAAGCCAGCACGCTTGCACTTGTTAAGACCTTCTCGCCATTCTCGCCATTCTGGCAGTTTGGGGTGGCAACGCCACAAAAGGAAAGCAGATTTTTCTCCTGCTCCTGCAAAAATTCCTCGGATATTAGAATCTGCGGTTGACCGAATGTCTGGTTTTATCAAAGATTGGAGTTATTTACGCATCATGGAAATAGCTGGAATATTGGTATGCATTTTAATGATCATTCCATCAGCTGATGCTGTTGACGCTCTCAAAACTTGTGCTTGTTTGCTGAAGGAATGCAGGATAGAATTGGCTAAGTGTCTTTCAAACCCATCATGTGCTGCCAATGTTGCTTGTCTCCAGACTTGCAACAATCGACCTGATGAGACTGAATGTCAAATTAAATGTGGAGACTTGTTTGAGAACAGTGTTGTTGATGAATTCAATGAGTGTGCAGTCTCAAGGAAGAAATGTGTTCCTAAGAAATCTGATGTGGGAGAATTTCCTGCTCCAAATCCTGATGTCCTTGTTAAGAGCTTTAACATTGCAGATTTCAGTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACCTTCGATACCTTTGATTGCCAATTACATAAATTTCACACAGAATCCAACAAACTTGTGGGTAATTTGTCATGGAGAATACAAACTCCAGATGCTGGATTTCTTACTAGGTCAACTGTGCAGAAATTTGTGCAAGATCCTTCTTATCCCGGGATCCTCTACAATCATGACAATGAATACCTTCACTATCAAGATGACTGGTATATTTTGTCATCCAAGATTGAGAATAAACCAGATGACTACGTATTTGTATACTACCGAGGCAGAAATGATGCATGGGAGGGTTATGGCGGTGCTGTAGTGTATACAAGAAGTGCAGTTTTGCCTGAATCTATAATTCCTGAACTTGATAAAGCGGCTAAGAGTGTGGGAAGAGACTTTAGCAAGTTCATCAAAACAGATAATACTTGTGGGCCAGAGCCTTCACTGGTGGAGAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGGAGACCATTGCAAGGGAAGTTGAACAGTTAGAAGGACAGGTAGAGAAGGTGGGGAAAACAGAGGCCACCTTATTTCAGAGGTTGGTAGAAGGGTTCAAAGTATTCCAAGAAGATGAGGAAAATTTCTTAAGAGGGCTATCAAAAGAAGAAATGGAAATACTTGACGGGCTCAAAATGGAAGCGGCTGAAGTAGAAAAGATCTTTGGACGTGCCTTGCCGCTAAGGAGACTACGATGA 1440 0.4201 MATLGAHSMLLYHQEGTGTPNVCIKVGLNDVRFHRTTRFQYPRSVVVLKVLSTTRKPARLHLLRPSRHSRHSGSLGWQRHKRKADFSPAPAKIPRILESAVDRMSGFIKDWSYLRIMEIAGILVCILMIIPSADAVDALKTCACLLKECRIELAKCLSNPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPKKSDVGEFPAPNPDVLVKSFNIADFSGKWFITSGLNPTFDTFDCQLHKFHTESNKLVGNLSWRIQTPDAGFLTRSTVQKFVQDPSYPGILYNHDNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRNDAWEGYGGAVVYTRSAVLPESIIPELDKAAKSVGRDFSKFIKTDNTCGPEPSLVERLEKKVEEGEETIAREVEQLEGQVEKVGKTEATLFQRLVEGFKVFQEDEENFLRGLSKEEMEILDGLKMEAAEVEKIFGRALPLRRLR. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05506 479 Pfam VDE lipocalin domain 141 381 IPR010788 GO:0046422
Seca2g05506 479 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 94 467 IPR044682 GO:0010028|GO:0046422
Seca2g05506 479 Gene3D - 212 393 IPR012674 -
Seca2g05506 479 CDD lipocalin_VDE 213 387 - -
Seca2g05506 479 Coils Coil 390 410 - -
Seca2g05506 479 ProSitePatterns Lipocalin signature. 230 241 IPR022272 -
Seca2g05506 479 SUPERFAMILY Lipocalins 218 387 IPR012674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05506 Seca-Chr2 141570592 141573294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05506 K09839 - gmx:100778118 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05506 2 141570592 141573294 Seca2g05506 2 141570592 141573294 ECH