Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05258 ATGGAAGCAGGTACCAGTGTGAAGCTAACTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTTCAGATAACTTTAATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTTGTGGAGTTTTATGCACCATGGTGTGGTCATTGCCAAGCCCTTGCCCCTACTTATGAAAAGGTTGCTACAGCATTTAAAATGGATGAAGATGTAGTTATAGCCAATGTGGATGCTGACCAGTACAAGGATTTGGCTGAGAAATATGGTGTTAGTGGCTACCCCACACTGAAGTTTTTCCCAAAGAGCAATAAAGCTGGTGAAGATTATGACGGTGGCCGTGATTTGGATGATTTTGTAGCTTTCATCAATGAAAAATGTGGCACCAACCGTGATGGGCGGGGGCAACTTACTTCTACAGCTGGTATAATTACATCTCTGGATGGCTTGGTGAAGGAGTTTGTGAGTGCTGACGATAATGAGAAGAAGGCAGTCTTTTCCCGGCTTGAGGAGGAAACTAAGAAGCTTAAGGGTTCTGCTGCTAGATATGGCAACATCTACTTAAAACTTGCTAAGAACAGTATGGAAAAGGGTGCAGGATATGCGAAGAATGAGATTCAACGTATTGAGCGCATGCTTGAGAAGTCAATTAGCCCTGCAAAGGCTGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGA 696 0.4282 MEAGTSVKLTSVPSSVVVLSSDNFNEVVLDETKDVLVEFYAPWCGHCQALAPTYEKVATAFKMDEDVVIANVDADQYKDLAEKYGVSGYPTLKFFPKSNKAGEDYDGGRDLDDFVAFINEKCGTNRDGRGQLTSTAGIITSLDGLVKEFVSADDNEKKAVFSRLEEETKKLKGSAARYGNIYLKLAKNSMEKGAGYAKNEIQRIERMLEKSISPAKADEFTLKKNILSTFA. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05258 231 Gene3D - 135 231 IPR036356 -
Seca2g05258 231 PRINTS Thioredoxin family signature 85 96 - -
Seca2g05258 231 PRINTS Thioredoxin family signature 35 43 - -
Seca2g05258 231 PRINTS Thioredoxin family signature 43 52 - -
Seca2g05258 231 Gene3D Glutaredoxin 8 133 - -
Seca2g05258 231 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 11 218 - -
Seca2g05258 231 FunFam Protein disulfide-isomerase A6 homolog 9 128 - -
Seca2g05258 231 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 137 230 IPR011679 GO:0005783
Seca2g05258 231 SUPERFAMILY ERP29 C domain-like 135 230 IPR036356 -
Seca2g05258 231 Pfam Thioredoxin 16 119 IPR013766 -
Seca2g05258 231 CDD PDI_a_ERp38 22 118 - -
Seca2g05258 231 ProSitePatterns Thioredoxin family active site. 36 54 IPR017937 -
Seca2g05258 231 CDD ERp29c 139 230 IPR011679 GO:0005783
Seca2g05258 231 NCBIfam protein disulfide-isomerase domain 20 121 IPR005788 GO:0003756
Seca2g05258 231 ProSiteProfiles Thioredoxin domain profile. 1 123 IPR013766 -
Seca2g05258 231 SUPERFAMILY Thioredoxin-like 13 124 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05258 Seca-Chr2 139163875 139167642 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05258 K09584 - gmx:100796355 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05258 2 139163875 139167642 Seca2g05258 2 139163875 139167642 ECH