Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05245 ATGGCCTTTGTAACAAGTCGCTCTTGTCTATCATGCCCAACGACCACAACCAACTTCTTCTTCTTCTCCTCTAATCTCAAACCTTCTTCGCTTCCACCTCGATTCTTCCATTGCCGATCGAAACGACTCGTTTTGACGCCGAGACTAGTGACCAAAGCTTGTGCGGTGAAAGTTGAAGAAAAGAACGTTGCCGGAAAATCAGGAGAATGGGGGAAGGTTTCTGCAGTGTTGTTTGACATGGATGGTGTGCTCTGCAACAGTGAAGAGCCTTCTAGAAGAGCCGGCGTCGATGTGTTCGCCGAGATGGGCGTCCAAGTCACCGTCGAGGATTTTGTGCCATTCATGGGAACCGGAGAAGCAAACTTTTTGGGAGGTGTTGCCTCTGTGAAGGGAGTTAAAGGATTTGACCCTGAAGCTGCAAAAAAGAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCCGGAATAGGATTTCCAGGTGCCCTTGAACTCATTACTCAGTGTAAAAGTAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTATAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTGCCATTGTCAATGTTTGATGCAATCGTGTCTGCAGACGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCGTCAAAAATATTGAATGTGCCCCCCAGTGAGTGTATAGTCATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGAACCACATTATCAGATGAGACTTTGGAATCTGCTGGCCCAACTTTTATCCGAGATAACATAGGAAGTGTTTCACTTGATGATATTCTCAATGGTGGCTCTGTTGGATATAATAAGAGGATGCAGGGCCCTGAAACTGTAAATAATTTTGCACAATCTTCATCTGCTGTGGTTGCGGGAAAGATGGATGACAGAGTTAGAAAAACTACAAATGATACTAATGAGAGTATTTTATCAAATGGAGGGTTGCAGGGTTCACGGCGAGATATACTGAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTTGTCTTCACCTTAAGTAACTGGAAGGCAATGCAATATGCTTCCCCTAAAGCAATTTGGAATCTGTTGTTTGGTGTTGCCCAGCCACCCTTGGAACAGAAAGAAGGTAACTCAAGATCTGATAGGATCCAGCAATTTGTGAACTACATAGCTGATTTAGAAAGCAGGGGAAATGCTCAGGTTGTTCCAGAGTTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTTCTGCTCGATTTCTGGACTTATTGCTGTATAAATTGTATGCATGTGTTACCAGACCTAGATATTTTGGAGAAAAAATACAAAGATATGCCGTTCATCGTTGTGGGTGTTCATTCTGCAAAGTTTGATAATGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATAACATCACTCACCCGGTTGTCAATGATGGAGACATGTACCTTTGGCGGAAGTTGGGCATAAATTCATGGCCAACATTTGCTATCATTGGCCCTGATGGTAAGGTCCTTGCACAACTTGCAGGAGAAGGTCACAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAACATTTTGGACAACACACCAATTACATTAAATTTAGAGAAAGACAATGATCCTCGCCTATTAACATCTCCATTGAAGTTTCCTGGAAAGCTAACAATTGATGTTCTCAACAACAGGCTTTTTATTTCTGACAGCAATCATAACCGCATAGTGGTTACTGACCTTGATGGGAATTTTATATTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCTGGATGGTTCCTTTGATGATGCCACTTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATTCTTTATGTTGCAGACACTGAAAACCATGCTTTGAGAGAAATTAATTTTGTTAATGAGAAAGTTCGTACTCTTGCTGGAAATGGAACCAAGGGCTCTGATTATATTGGAGGAGGAAAAGGAGACACTCAGCTCCTCAATTCCCCTTGGGATGTTTGCTTTCATCCACTCGAAGAAAAGATTTATATTGCCATGGCAGGCCAACATCAGATTTGGGAGCACAATATATTGAGTGGAATTACAAGAGCATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTGCATTGTCTCAAGATCAAATGGAGCTCTACATCGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTTGATCTGAAAACAGGAGGATCTCGGTTGCTAGCTGGTGGTGACCCTATCTTTCCTGAAAATTTGTTTAAGTTTGGTGACCAAGATGGAATAGGCTCTGAAGTACTTCTTCAACATCCACTGGGGGTTTTGTGTGGAAAAGATGGTGAAATTTATATCACAGATAGCTACAATCACAAGATCAAGAAGTTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGGAAAGCTGGGTTCAGGGATGGAACAGCTGTAACAGCTCAGCTTTCTGAACCAGCAGGAATTGTTGAAGGGAACAATGGGAGACTATTCATTGCTGATACAAACAACAGCTTAATCCGATATCTAGATTTGAACAGTGATGAGATTGAACTCCGAACCTTGGAGCTTAAAGGATTTCAGCCTCCGAAAACAAAATCAAGATCTTTTAAACGTCTCAGGAGACGACCATCAGCTGATACGGTGTCAATTACTATCGATGCCATTGCATCAAAGGATGGAAACTTGTCTATTGAAATATCATTACCGAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGTGTTGATGTTGAACCTGAAGACGCTGTGAATATTGATCCCCTGGATGGATTCCTTAGTCCAGAAGGATCTGCAACCCTTCACTTTAAGAGAACCTCTAACTCTGCTTCAATTGGAAAAATTAATTGCAAGATTTACTATTGCAAGGAAGATGAGGTTTGTTTGTACCAATCCTTGCTGTTTGAGGTCCCCTTCCAAGAGGGAGTTTCTAACTCTACCAAAGCAGACGTCACTCTTGCTCATTTTGTGAAGCCCAAAACTTCAACCAACGGCTTACTTCAGCCAGTTGCCCCGTGA 3249 0.4207 MAFVTSRSCLSCPTTTTNFFFFSSNLKPSSLPPRFFHCRSKRLVLTPRLVTKACAVKVEEKNVAGKSGEWGKVSAVLFDMDGVLCNSEEPSRRAGVDVFAEMGVQVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELITQCKSKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASKILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTTLSDETLESAGPTFIRDNIGSVSLDDILNGGSVGYNKRMQGPETVNNFAQSSSAVVAGKMDDRVRKTTNDTNESILSNGGLQGSRRDILRFGSLGIAISCLVFTLSNWKAMQYASPKAIWNLLFGVAQPPLEQKEGNSRSDRIQQFVNYIADLESRGNAQVVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDILEKKYKDMPFIVVGVHSAKFDNEKDSEAIRNAVLRYNITHPVVNDGDMYLWRKLGINSWPTFAIIGPDGKVLAQLAGEGHKKDLDDFVEAALLFYGKQNILDNTPITLNLEKDNDPRLLTSPLKFPGKLTIDVLNNRLFISDSNHNRIVVTDLDGNFILQIGSSGEEGLLDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREINFVNEKVRTLAGNGTKGSDYIGGGKGDTQLLNSPWDVCFHPLEEKIYIAMAGQHQIWEHNILSGITRAFSGDGYERNLNGSSSTSTSFAQPSGLALSQDQMELYIADSESSSIRAVDLKTGGSRLLAGGDPIFPENLFKFGDQDGIGSEVLLQHPLGVLCGKDGEIYITDSYNHKIKKLDPTSKRVSTIAGTGKAGFRDGTAVTAQLSEPAGIVEGNNGRLFIADTNNSLIRYLDLNSDEIELRTLELKGFQPPKTKSRSFKRLRRRPSADTVSITIDAIASKDGNLSIEISLPNEYHFSKEARSRFSVDVEPEDAVNIDPLDGFLSPEGSATLHFKRTSNSASIGKINCKIYYCKEDEVCLYQSLLFEVPFQEGVSNSTKADVTLAHFVKPKTSTNGLLQPVAP. 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05245 1082 CDD HAD_BPGM-like 75 261 - -
Seca2g05245 1082 FunFam NHL repeat-containing protein 2 401 565 - -
Seca2g05245 1082 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 72 282 - -
Seca2g05245 1082 Gene3D - 75 267 IPR023214 -
Seca2g05245 1082 ProSiteProfiles Thioredoxin domain profile. 417 563 IPR013766 -
Seca2g05245 1082 NCBIfam HAD-IA family hydrolase 162 259 IPR006439 -
Seca2g05245 1082 Pfam Haloacid dehalogenase-like hydrolase 76 259 IPR041492 -
Seca2g05245 1082 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 98 1078 - -
Seca2g05245 1082 SUPERFAMILY HAD-like 73 282 IPR036412 -
Seca2g05245 1082 ProSiteProfiles NHL repeat profile. 829 859 IPR001258 GO:0005515
Seca2g05245 1082 SUPERFAMILY Thioredoxin-like 421 559 IPR036249 -
Seca2g05245 1082 FunFam Chloroplast protein HCF243 809 913 - -
Seca2g05245 1082 Pfam Thioredoxin-like 446 541 IPR012336 -
Seca2g05245 1082 Gene3D Glutaredoxin 393 564 - -
Seca2g05245 1082 FunFam NHL repeat-containing protein 2 578 734 - -
Seca2g05245 1082 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 72 282 - -
Seca2g05245 1082 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 73 84 IPR006439 -
Seca2g05245 1082 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 203 219 IPR006439 -
Seca2g05245 1082 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 171 184 IPR006439 -
Seca2g05245 1082 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 221 241 IPR006439 -
Seca2g05245 1082 CDD NHL-2_like 631 972 IPR045302 -
Seca2g05245 1082 Gene3D - 812 911 IPR011042 -
Seca2g05245 1082 Gene3D - 565 738 IPR011042 -
Seca2g05245 1082 SUPERFAMILY NHL repeat 587 916 - -
Seca2g05245 1082 Gene3D Putative phosphatase; domain 2 86 157 IPR023198 -
Seca2g05245 1082 SMART LY_2 758 800 IPR000033 -
Seca2g05245 1082 SMART LY_2 586 628 IPR000033 -
Seca2g05245 1082 Pfam NHL repeat 649 674 IPR001258 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05245 Seca-Chr2 139064276 139079863 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05245 - - gmx:100795843 1880.53