Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05240 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACCAGTTCTCCAGTGAGAAAGCGGCACAAGGTTCGGAACTCAAGAAAGAAACGTGATGGTGAAGCATTCTCTGATGGTGGAAGTGATTCCAGAGAGGAAGATTCTGATGAGGGTGCTGGTGCTGCAAGCAAGAGGCCACCAAGATCTGCATCCCATGTTCCATTGAAGAAGAGGTTGGACATCAGCAGAAGTGGTAGTCACAATAATGAACATGGCAGCAAGGGAGGAGGTGAGTTGGAGGATGGAGTTCCTGCTAATGAAGAAGATGGCAGCAGTGAAGAATCTGATATTGGCAGTGATCTTTACAAGAATGAAGATGACAAGCATAGGCTTGCAAAGATGACTGAACTTCAAAGAGAGATGATTTTGTCAAATAGAGCATCCAAGAAAGGTGATAAGGAACTCAGAGAGCAATTGAGAATGAAGAGGGACAGCAACAATAATGCAAATGCAAAGGCTACTGCTCAATCATCATCTGCTAAGGTTCGTTCATCTGCTAGACATGCTGAGAGGACAGCTGCAAAGGGTGATGTCCTTAGTGAATTGCGTGCAAAAAGGATGAAGCAACAGATCCTAGACACTCATGGTAAATTGGGCAATACATCAGGAAAAGGCTCAAGTAACAAGGGAGTGAAGCAAAAATCTGCAAAAACAGCATCAAGTTCAAGTAGCTCTAGTCAGAGTGAGAGTGTTAATAGGTCTGATAGTGAAAGAGAATCCTCTGATGATGGTGGATTGGCTGATAGTGATGATGATAAGGATATGCATGAATCAGAGAGGCCAACATTTCAGGATATAAAGGAAATCACCATTAGGAGGTCAAAGCTTGTAAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGTTGTTTTGTGAGAATGGGTATAGGAAAGTCAGACAGTGGACCTGTATACAGGCTCTGCATGGTTCAGAGAGTTGATGGTGGTGACCCAAATAAACATTACAAGGTAGAGAATAGGATCACTCATAAGTATCTGGTTTGTGTCTGGGGTAGTGAAAACTCTGCTAAAAAGTTTCAGATGGCTGTAGTTTCAGATTCTGCACCATTGGAGAAAGAGTTCAAGCAATGGCTTAGAGAAGTTGATAGAACTTGCAGCCAACTGCCTAGTAAGCTGAATGTATCAGAAAAGAAAGAGGCCATAAGAAGAACCAACACATACATTTATTCAGCAGCTACTGTGAAGCAGATGCTAGAGGAAAAAAAATCTGCCTCATCTAGGCCACTGAACATTGCAGTAGAGAAGGATCGTTTGAAGAGGGAGTTGGAAATAGCAAAAAGTAAGAATGATGAGGCAGAGGTGGATAGGATCCTCAAAAGGATGGCTGAATTGGAAGCAACTCGTAAAGCCAGGGAGAATGATGCCAAGGCTATCAGGCTGGCTGAGATGAACAGAAAGAACAAGTTTGAGAACTTCAAAAACTTGTCTGAGCATAGACAGGCAAATGCAAATTTAAAAGCCGGAGAGGAGGGGTATGATCCTTTTTCTAGGAGGTGGACAAGGTCAAGGAATTACTACAATTCAGCACAAGGAAAAGAGAGTAAAGAAGATGAGGAGAATGAAGGAGGTAAAGGAGAAAAGGATGAAACTAGAGGTGAAGTTAGTAAGGGGAAAGAAGAAGAACCTGTCACAACAAAGGTTGGTGTTGAAGCCACAGAAGCAGCATTGCAAGCTGCAGCTAATGCAGGGAAGTTGGTTGATACTTCTGCTCCTGTGGATCATGGAACAGAATCATATATACTGCATGATTTTGACTTGCCAATTTCATTGACTGAACTTAAGAATTTTGGTGGAGCACAAGGACTGGAAGATGCGTTTCTGGCAAGGAAACAAAAAATAGAAGCAACAATTGGTTGCCGGGTCCCTGAGAATGATGGGAGTAGGCATGCTCTTACATTAACTATCAGTGATTACAAGAGAAGAAGAGGGCTTCTCTGA 2007 0.426 MADLENMLLEAAGRTSSPVRKRHKVRNSRKKRDGEAFSDGGSDSREEDSDEGAGAASKRPPRSASHVPLKKRLDISRSGSHNNEHGSKGGGELEDGVPANEEDGSSEESDIGSDLYKNEDDKHRLAKMTELQREMILSNRASKKGDKELREQLRMKRDSNNNANAKATAQSSSAKVRSSARHAERTAAKGDVLSELRAKRMKQQILDTHGKLGNTSGKGSSNKGVKQKSAKTASSSSSSSQSESVNRSDSERESSDDGGLADSDDDKDMHESERPTFQDIKEITIRRSKLVKWLNEPFFEELIVGCFVRMGIGKSDSGPVYRLCMVQRVDGGDPNKHYKVENRITHKYLVCVWGSENSAKKFQMAVVSDSAPLEKEFKQWLREVDRTCSQLPSKLNVSEKKEAIRRTNTYIYSAATVKQMLEEKKSASSRPLNIAVEKDRLKRELEIAKSKNDEAEVDRILKRMAELEATRKARENDAKAIRLAEMNRKNKFENFKNLSEHRQANANLKAGEEGYDPFSRRWTRSRNYYNSAQGKESKEDEENEGGKGEKDETRGEVSKGKEEEPVTTKVGVEATEAALQAAANAGKLVDTSAPVDHGTESYILHDFDLPISLTELKNFGGAQGLEDAFLARKQKIEATIGCRVPENDGSRHALTLTISDYKRRRGLL. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05240 668 Coils Coil 438 477 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 158 177 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 208 245 - -
Seca2g05240 668 Pfam Plus-3 domain 279 384 IPR004343 GO:0003677
Seca2g05240 668 Gene3D - 275 407 IPR036128 GO:0003677
Seca2g05240 668 ProSiteProfiles Plus3 domain profile. 274 409 IPR004343 GO:0003677
Seca2g05240 668 MobiDBLite consensus disorder prediction 67 91 - -
Seca2g05240 668 SMART rtf1 274 386 IPR004343 GO:0003677
Seca2g05240 668 MobiDBLite consensus disorder prediction 246 275 - -
Seca2g05240 668 SUPERFAMILY Plus3-like 276 406 IPR036128 GO:0003677
Seca2g05240 668 MobiDBLite consensus disorder prediction 1 275 - -
Seca2g05240 668 PANTHER UNCHARACTERIZED 206 667 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 178 206 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 533 569 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 137 157 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 110 130 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 30 55 - -
Seca2g05240 668 MobiDBLite consensus disorder prediction 527 569 - -
Seca2g05240 668 FunFam RNA polymerase-associated protein RTF1 275 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05240 Seca-Chr2 138862743 138864749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05240 K15178 - gmx:100793188 861.292