Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05238 ATGGCTAATGCAATAACAATGCTGGGTTTTCTACCCACTACCCAGATGGCGTCGTTTCAGTTACCCAGTCACACCCACTCCTTCCATTCTCCTCGCTGCTCCCTATCTCCAACACCCCAATCGCAGACTAAAGCTTTTGCAGTTCCAAGGAGGAAAGCGTTGTCCTTTATGTTATCAAGTTATGTTCTCTCAGAGGTTGGTTTAGCATTGGCTAAGTCTCCTGTTTTCCGCGAATATGTAGACACATTTGATGGTTATTCATTCAAGTACCCAGGAAATTGGATTCAAGTTCGAGGTGCTGGGGCTGACATATTCTTCAGGGACCCTTATGTTCTTGATGAAAATCTATCTGTTGAACTTTCTTCACCTTCATCTTCCAGATACAAGAGTGTTGAAGACTTGGGTCCACCCCAAGAAGCTGGAAAGAAAGTGCTCAAGCAATATCTCACTGAGTTTATGTCTACAAGACTTGGCGTTAGGCGTGAATCAAATATTCTCTCCACATCTTCAAGAGTAGCTGATGATGGCAAGTTATACTATCAAGTGGAGGTTTGTTAA 558 0.4319 MANAITMLGFLPTTQMASFQLPSHTHSFHSPRCSLSPTPQSQTKAFAVPRRKALSFMLSSYVLSEVGLALAKSPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPYVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEVC. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05238 185 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 71 185 - -
Seca2g05238 185 PANTHER - 22 184 - -
Seca2g05238 185 NCBIfam photosystem II reaction center PsbP 53 183 - -
Seca2g05238 185 Pfam PsbP 76 184 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Seca2g05238 185 SUPERFAMILY Mog1p/PsbP-like 77 184 IPR016123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05238 Seca-Chr2 138856028 138858042 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05238 - - gmx:100792664 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05238 2 138856028 138858042 Seca2g05238 2 138856028 138858042 ECH