Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05229 ATGTCACTGTCTTTCTCTTCAACCTCGATAGCATTCTCAGAATCTTCATTTACATTCGCCAGACCAACAAATCTTTGTTCAAATGGTCACACAATCACGGGTGGTGCATCAAACTGCTTTCATTCAGTAGCAGGTGGTGGTCGTCTTGTACTGAATGTTGGAGGTTCCCCCTTGTGTCGAAGATTTCGTGGTTTCAAATTGTGGATACTTGAGAAACTCAACTTCCAACCAACGAAGCAACCTAAGAGTAGAAATCACTTCAAAAATAATCTGGACACAGGTTTTTCCAATGATAAGGGACCGCTTTCTGATTCATCCTCAATTCTTCGTGTTCCTGATGATAAGGTCGCTTCCATGGAGTATCCATCTTTGCTGCAAACAAGTTCTTCCACCTCTCCCATGGATGTTAGTAGAGAACCTTCACTTTGCATTACTGTCATTGGAGCCACTGGTGAGCTGGCAAGGAGGAAGATTTTTCCAGCTTTATTTGCCCTCTACTACAGTGGTTTTCTTCCTGAGAATGTAGGCATTTTTGGCTATTCAAGGAAGACTATAACTGATGAAGACCTGCGATCCATTATAGCTTCAACATTAACATGCCGAGTTGATCATCAACAGTATTGTGGGGACAAGATAGATGCTTTTCTTGATAGAACATATTATGTTAATGGAGGCTTTGACAACAAACATGGGATGTCCTTGCTGAATGCCAGAATGGAGCAAATCGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCACTTTTGGATGTTGCATCATGTCTTGCAAGCAATGCTCAGACTCAAAAGGGATGGAATCGCATAATAATTGAGAAGCCATTTGGCTTTGATGCAGTCTCTTCCGACAGGCTGACACAATATCTTCTTTCAAAGTTTAGGGAAAAGCAAATATATAGGATTGATCATCTTCTAGGAAGGAATCTCATTGAAAATCTCACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTATGGAGTCGTACATACATACATAATGTACAGGTCATTTTATCAGAGGACTTGGCTGTACATCCAGGAAGGTATTTCGGTGGCTATGGGATTATCCGTGATATTGTTCACAGTCATGTGCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAATTAGCCTTGATGGAGAAGATATTCGAAATGAAAAGGTGGTCATATTCCAGCACTCAGGTGTTGATGATCCTATGAGATACTTTGAAGCGTGTAAGCATTGCTTAAGCACTGCCCACTGGATGCTCAAGTGTGTCAGTGCTCAGGTCAAGGTTCTGAGATCAATTCGCAAATTGGAGCCTAAGGATGTCATTCTTGGCCAGTATAAAACAAGTAACAAAGACAAGGTTGATGTGTGTTTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAACGCACGGTGGGATGGCGTGCCATTTTTGGTTAAAACAGGCTTGGGACTCATCAAACACCAGTTAGAAAATATATTTAATGCAGGATGGAGATACGGATTCAATTTCGTCATGTTCCAGGAAATGTTTACCATGAATGCATCGGGCATAATATTGACCGAGCCACAAATGAGCTCATTCTTCGTGATGTTCCTGATGAAGCTATTCTGGTGAGAGTAAACAACAAGGTTCCAGGATTGGGCTTACAACTGGACTCTTCAGAATTAAATTTGCTTTACAAGGACAAGTACAACATGGAGGTTCCAGATTCATACGAGCATCTTCTGCTTGATGTCATTGATGGGGATAACCATCTGTTTATGAGAAGTGATGAGCTGGCAGCTGCGTGGAACATTCTAAGTCCAATTCTGAATGAGATAGATAAAGACAACATATCAGTGGAGCTTTATGAGTTGGGGGGTCGCGGTCCTGTTGGGGCATACTACCTCTGGGCAAAACATGGTGTCCGTTGGGTAGAGGACTAG 1976 0.419 MSLSFSSTSIAFSESSFTFARPTNLCSNGHTITGGASNCFHSVAGGGRLVLNVGGSPLCRRFRGFKLWILEKLNFQPTKQPKSRNHFKNNLDTGFSNDKGPLSDSSSILRVPDDKVASMEYPSLLQTSSSTSPMDVSREPSLCITVIGATGELARRKIFPALFALYYSGFLPENVGIFGYSRKTITDEDLRSIIASTLTCRVDHQQYCGDKIDAFLDRTYYVNGGFDNKHGMSLLNARMEQIEGGSKTNRIFYLSVPQEALLDVASCLASNAQTQKGWNRIIIEKPFGFDAVSSDRLTQYLLSKFREKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIHNVQVILSEDLAVHPGRYFGGYGIIRDIVHSHVLQTIALLAMEPPISLDGEDIRNEKVVIFQHSGVDDPMRYFEACKHCLSTAHWMLKCVSAQVKVLRSIRKLEPKDVILGQYKTSNKDKVDVCLNGLTPTYFAAALYIDNARWDGVPFLVKTGLGLIKHQLENIFNAGWRYGFNFVMFQEMFTMNASGIILTEPQMSSFFVMFLMKLFW.E.TTRFQDWAYNWTLQN.ICFTRTSTTWRFQIHTSIFCLMSLMGITICL.EVMSWQLRGTF.VQF.MR.IKTTYQWSFMSWGVAVLLGHTTSGQNMVSVG.RT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05229 650 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 146 324 IPR022674 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 Gene3D Dihydrodipicolinate Reductase; domain 2 431 521 - -
Seca2g05229 650 MobiDBLite consensus disorder prediction 79 104 - -
Seca2g05229 650 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 436 505 IPR022675 GO:0004345|GO:0006006|GO:0050661
Seca2g05229 650 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 327 406 IPR022675 GO:0004345|GO:0006006|GO:0050661
Seca2g05229 650 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 436 506 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 435 507 - -
Seca2g05229 650 Gene3D Dihydrodipicolinate Reductase; domain 2 314 407 - -
Seca2g05229 650 PRINTS Glucose-6-phosphate dehydrogenase signature 304 332 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 PRINTS Glucose-6-phosphate dehydrogenase signature 280 293 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 PRINTS Glucose-6-phosphate dehydrogenase signature 373 389 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 PRINTS Glucose-6-phosphate dehydrogenase signature 487 513 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 PRINTS Glucose-6-phosphate dehydrogenase signature 355 372 IPR001282 GO:0006006|GO:0016614|GO:0050661
Seca2g05229 650 Gene3D - 145 313 - -
Seca2g05229 650 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 136 327 IPR036291 -
Seca2g05229 650 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 314 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05229 Seca-Chr2 138794850 138800398 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05229 K00036 - gmx:100796541 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05229 2 138794850 138800398 Seca2g05229 2 138794850 138800398 ECH