Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05225 ATGGGGTTTTTACAAAACTTGGTTTTGATGGTTTTAATGGTGTCATTGGTTTTTAGCCAATATGGGAATTGTAGGCATATTGGTCATCATCACGGCCACTCACACAAACACCGTGCAGGTGGGGGCGGTAGAAGGCTTAGGGGTAGTTTCGTTCAAAGAAATGGCACCCATTTTATTTTGAATGGGAAGCCACACTACTTAAATGGGTTCAATGCATATTGGTTAATGAGCATAGCATCTTACCCATATACAAGCTCCAAGGTTACTACCACTTTTCAGGAAGCTTCTCAACATGGTTTGAACTTAGCAAGAACCTGGGCTTTCAACGATGGAGGTGATAAAGCTCTTCAGATTTCCCCTGGTTCTTATGACGAGGATGTCTTTAAGGCATTGGATTTTGTGATATCAGAAGCAGGGAAATATGGAGTACGACTGATACTAAGCTTAGTGAATAACTGGAACGATTATGGTGGAAAAAATAAGTATGTTCAATGGGCAAGGGAACGTGGCGAGAACGTGAATAATGACGATGACTTCTTCACACACCCCGTTGTTAAACAATATTATAAAAACCATGTCAAGGTAACAATAGCCAGGCAGGCTGTGTTGACAAGAAACAATACAATAACTGGATTGGCATATAAGGACGACCCAACCGTTTTCGCATGGGAGCTTATGAATGAGCCTCGTTCCCAATCTGACTATTCTGGAAAATCAATTCAGGATTGGGTGAGTGAGATGGCCGTTTATGTGAAGTCCATTGATAGCAATCACTTACTAGAAATTGGACTTGAAGGATTTTATGGTGAGTCGATGCCAGAAAAGAAGCAATTCAATCCTGGATACCAAGTTGGAACTGATTTCATTTCCAATAACCAAGTTCCCGAAATCGATTTTGCCACCATCCATATCTACCCTGAACAATGGGTTTCGGGCTCAGATGAAGCTGCCCAAGAAGCGTTTGTAAACAAGTGGGTCCAAGCCCATACTCAAGACTCAAATGATGTTCTAAGAAAGCCTATTCTACTTACCGAGTTTGGAAAGTCTTCAAGATTGTCAGGATATAGCGTGGATATAAGGAATAGTTACTTTGGGAAACTATACAATTTCATATACAGTAGCGCTAGCAGTGGGGGCCCATGTGCTGGTGGGCTTTTCTGGCAGCTCATGGCCCAAGGAATGGATGGCTATCGTGATGGTTATGAAGTCATCTTCGAGGAGAGTCCTTCAACAGCCTCTATCATCACTCAACAATCTCGGAGGCTGTCAGCTCTTAAAAAGTAG 1284 0.4229 MGFLQNLVLMVLMVSLVFSQYGNCRHIGHHHGHSHKHRAGGGGRRLRGSFVQRNGTHFILNGKPHYLNGFNAYWLMSIASYPYTSSKVTTTFQEASQHGLNLARTWAFNDGGDKALQISPGSYDEDVFKALDFVISEAGKYGVRLILSLVNNWNDYGGKNKYVQWARERGENVNNDDDFFTHPVVKQYYKNHVKVTIARQAVLTRNNTITGLAYKDDPTVFAWELMNEPRSQSDYSGKSIQDWVSEMAVYVKSIDSNHLLEIGLEGFYGESMPEKKQFNPGYQVGTDFISNNQVPEIDFATIHIYPEQWVSGSDEAAQEAFVNKWVQAHTQDSNDVLRKPILLTEFGKSSRLSGYSVDIRNSYFGKLYNFIYSSASSGGPCAGGLFWQLMAQGMDGYRDGYEVIFEESPSTASIITQQSRRLSALKK. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05225 427 Pfam Cellulase (glycosyl hydrolase family 5) 61 351 IPR001547 GO:0004553|GO:0071704
Seca2g05225 427 PANTHER - 7 425 IPR045053 GO:0004553
Seca2g05225 427 FunFam Mannan endo-1,4-beta-mannosidase 6 47 426 - -
Seca2g05225 427 Gene3D Glycosidases 47 426 - -
Seca2g05225 427 SUPERFAMILY (Trans)glycosidases 50 413 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05225 Seca-Chr2 138766737 138770239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05225 48 427 Glycoside Hydrolase AT5G66460 55.789 3.40e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05225 K19355 - gmx:100791612 634.795