Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05196 ATGCTGCGTCTGAAAGCGTTCCGGCCTACCAGCGATAAAATCGTTAAGATCCAATTGCATCCGACGCATCCATGGATGGTCACAGCCGATGATTCGGATCGAGTATCCGTTTGGAACTGGGAACACCGCCAGGTGATATATGAGTTGAAAGCGGGAGGAGTGGACGAGCGACGTTTGGTCGGTGCCAAGTTGGAGAAGCTAGCTGAGGGAGAAACAGAGTCCAAAGGGAAACCCACAGAAGCGATTCGTGGAGGAAGTGTTAAGCAGGTGAATTTTTATGATGATGATGTACGCTTTTGGCAACTCTGGCATAATCGCTCTGCAGCTGCAGAGGCTCCAACAGCTGTCCATACTTCTACTTTCAGTTCTCCTGCCCCATCAACAAAAGGGAGGCATTTTCTTGTCATATGTTGTTTAAACAAAGCTATATTTTTGGACTTGGTGACGATGCGTGGCCGTGATGTACCAAAGCAAGAGCTTGATAACAAGTCCCTTCATTGCATGGAGTTCCTTTATAGATCTGGTGTTGGTGATGGTCCTCTTGTTGCGTTTGGTTCATCTGATGGAGTCATTAGAGTTCTCTCAATGATGACATGGAAGCTTGTGCGAAGGTACACTGGAGGTCATAAAGGATCAATCTCTTGCTTGATGTCCTTCATGGCTGCTTCTGGCGAGGCTCTTCTGGTTTCGGGTGCCAGTGATGGATTGCTCATAATTTGGAGTGCTGATCATGGGCAAGATTCACGTGAACTTGTACCCAAGCTGAGTTTAAAAGTACCATTCTTTTCCTTATGTAACTCCTCTTTGTCAGCGCATGATGGCGGGGTTGTGGCAGTTGAGCTGTCTAGGGTGATGGGAGGTGCTCCTCAGCTAATTACAATTGGTGCAGATAAGACATTAGCTATATGGGACACAGTTTCCTTTAAGGAACTGCGGCGTATAAAGCCAGTTCCAAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAATCTTGATATTCTAACCTGTGTCAAAGATTCCCACATATGGGCAATTGAACATCCCACTTATTCTGCTCTCACAAGGCCATTGTGCGAATTAACTTCGGTTATTCCTCCACAAGCTCTTGCTCCTAGTAAGAAACTGAGGGTGTATTGTATGGTTGCACATACTTTGCAGCCACATCTTGTTGCAACTGGAACCAATATTGGTGTTATTATCTGCGAGTTTGATTCTAGATCTCTTCCACCTGTTGCTCCCCTACCAACCCCACCAGATAGTAGAGAGCATTCTGCCATATTTGTAATTGAAAGGGAACTAAAGCTACTAAATTTTCAGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACAGGAAGACCTAAGGGAGATTTTTTTGAACCATTGCCTGTCAAGCAGGGGAAGAAGCACATTAGTACACCTGTTCCACATGATTCATACTCAGTTCTTTCTGTGAGCAGTTCAGGAAAGTATCTAGCAATCGTGTGGCCAGATATACCTTATTTCTCTGTCTACAAGGTTAGTGATTGGTCGATTGTTGACTCTGGCAGTGCAAGACTTCTTGCTTGGGATACTTGTCGTGACAGATTTGCTATATTAGAATCAGCATTACCTCCTAGAATTCCTATTATTCCCAAGGGTAGTTCATCAAAAAGGGCAAAAGAAGCTGCTGCAGCACAAGCAGCAGCAGCAGCTGCTGCTGCTGGTTCCACAGCTTCTGTTCAAGTCCGCATCTTGTTAGATGATGGAACATCAAATATACTAATGAGGTCTGTTGGCGCACGCAGTGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTCGGTGTTGCTTATCGAACATCTAGGAGAATCAGTCCTGTTGCTGCTACAGCTATTTCAACTATCCAGTCTATGCCTTTATCAGGTTATGGAAGCAGTGGTCTTTCTTCTTTTACTACTTATGATGATGGATTTTCTTCAAACAGATCTCCAGCTGAGGCAGCACCTCAAAACTTCCAGCTATACAGTTGGGAGACATTCCAGCCTGTGGGGGGTCTACTTCCTCAGCCAGAATGGACTTCTTGGGACCAAACTGTCGAGTACTGTGCATTTGCATACCAACAATACATAGTCATATCTTGTTTGCGCCCACAATATAGATACCTGGGAGATGTTGCAATCCCACATGCTACTAGTGCTGTTTGGCACCGGAGGCAGCTGTTTGTGGCAACACCAACTACTATAGAAATTGTTTTCGTGGATGCTGGGGTTGCACAAATTGACATTGAAACTAAGAAGATGAAAGAAGAGCAGAAAATGAAAGAAGCACAGGCAAGAGCAGTCGCAGAGCATGGAGAGTTAGCACTAATAACAGTAGATGGTCCACAATCAACTACAGAAGAAAGAATATCATTGAGGCCACCAATGCTGCAGGTAGTTCGATTGGCTTCATTTCAACATGCTCCTTCAGTGCCACCTTTCTTAACATTACCAAAACATACTAGAGTTGATGGTGATGACTCTTGGATGGCAAAAGAAGCAGAAGAGAGAAAGGCAAGTGAGGTGGCTGTTGGTGGTGGGGGTGTGTCTGTGGCGGTTACTCGTTTTCCGATGGAGCAGAAACGTCCAGTTGGGCCTCTTATTGTGGTTGGTGTCAGGGATGGAGTTCTTTGGCTAATTGACAGGTACATGCATGCTCATGCCTTATCATTGAGTCATCCTGGTATACGTTGCCGATGTCTTGCTGCTTATGGTGATGCTGTTAGTGCAGTAAAATGGGCAAGTAGGCTTGGGAGAGAACATCATGATGATTTAGCACAATTTATGCTAGGAATGGGCTATGCTACTGAAGCACTTCATTTGCCTGGAATATCTAAGAGGTTGGAGTTTGATTTGGCAATGAAGAGCAATGATTTGAAGAGAGCTCTTCAGTGTCTTCTTACCATGAGTAACAGCAGGGATATAGGACGTGATGGTACTGGGCTTGGTTTGAATGACATTCTTAATTTAACAGATAAAAAACAAGATATTGTTGAAGGTGTTCAGGGTATAGTGAAGTTCGCAAAAGAGTTCTTGGATCTTATTGATGCTGCAGATGCTACAGCACAGGGTGAAATTGCCCGTGAAGCTCTCAAGAGATTAGCTGCTGCTGGCTCAGTGAAAGGTGCTTTACAAGGTCATGAGTTGAGGGGATTAGCATTGCGCCTTGCAAATCATGGAGAGTTGACTCGGCTAAGTGGTTTGATAAACAACTTAATCACACTTGGCTTGGGACGGGAAGCTGCATTTGCTGCTGCTGTTTTGGGCGACAATGCTCTAATGGAGAAAGCATGGCAGGATACTGGAATGCTGGCAGAGGCTGTGCTTCATGCTCATGCACATGGACGTCCAACTTTGAAGAACTTGGTTCAGGCCTGGAACCAAATGCTACAGAGAGAGGTTGAGCCTACTCCATCACAGAAGACAGATGCTACAGCTGCATTTCTAGCTTCTCTTGAGGCGCCTAAGCTTACGAGTTTGGCAGAAGCAGGGAAGAAACCTCCTATTGAAATCTTACCTCCAGGGATGATTTCTCTTAATGCTCCTATCTCCATCCAGAAAAAACCAGCTTCTGCTTCTCAGAATTCCCAACAACAACCAGACAAGCCACTGGCACTGGAAGCACCACCTACAACCACGGCAGCGCCTGAGAGTGCTAAACAGCAGCCTGAATCTGCAACTACACCAGTAACTGATCCACCTCCATCAGAGTCTACCTCAGACTCCACGCCAGTTCCAGAGGCTGCTCCACCTCAACCAGAATCAGGTGAAACCACTGTAGATAATGGAGGTCCTGCCCCTGCGCCAGCAAGTGATGAAAATCCAAATGTTAATGAGGAAACTGTTCAAGCAGTTCCTACGAGCAATCCAGCACCGCCTGAGGTCCCATCACCAGTAGCAGAGGTTTCAGAGACGAAAGTACCAAGTCCAACAACAGCACCTGTGAGTGACACCCTCATATGA 4017 0.4573 MLRLKAFRPTSDKIVKIQLHPTHPWMVTADDSDRVSVWNWEHRQVIYELKAGGVDERRLVGAKLEKLAEGETESKGKPTEAIRGGSVKQVNFYDDDVRFWQLWHNRSAAAEAPTAVHTSTFSSPAPSTKGRHFLVICCLNKAIFLDLVTMRGRDVPKQELDNKSLHCMEFLYRSGVGDGPLVAFGSSDGVIRVLSMMTWKLVRRYTGGHKGSISCLMSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKVPFFSLCNSSLSAHDGGVVAVELSRVMGGAPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELTSVIPPQALAPSKKLRVYCMVAHTLQPHLVATGTNIGVIICEFDSRSLPPVAPLPTPPDSREHSAIFVIERELKLLNFQLNNSANPSLGNNSSLSETGRPKGDFFEPLPVKQGKKHISTPVPHDSYSVLSVSSSGKYLAIVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALPPRIPIIPKGSSSKRAKEAAAAQAAAAAAAAGSTASVQVRILLDDGTSNILMRSVGARSEPVIGLHGGALLGVAYRTSRRISPVAATAISTIQSMPLSGYGSSGLSSFTTYDDGFSSNRSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTSWDQTVEYCAFAYQQYIVISCLRPQYRYLGDVAIPHATSAVWHRRQLFVATPTTIEIVFVDAGVAQIDIETKKMKEEQKMKEAQARAVAEHGELALITVDGPQSTTEERISLRPPMLQVVRLASFQHAPSVPPFLTLPKHTRVDGDDSWMAKEAEERKASEVAVGGGGVSVAVTRFPMEQKRPVGPLIVVGVRDGVLWLIDRYMHAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMKSNDLKRALQCLLTMSNSRDIGRDGTGLGLNDILNLTDKKQDIVEGVQGIVKFAKEFLDLIDAADATAQGEIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLINNLITLGLGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNQMLQREVEPTPSQKTDATAAFLASLEAPKLTSLAEAGKKPPIEILPPGMISLNAPISIQKKPASASQNSQQQPDKPLALEAPPTTTAAPESAKQQPESATTPVTDPPPSESTSDSTPVPEAAPPQPESGETTVDNGGPAPAPASDENPNVNEETVQAVPTSNPAPPEVPSPVAEVSETKVPSPTTAPVSDTLI. 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05196 1338 MobiDBLite consensus disorder prediction 1292 1306 - -
Seca2g05196 1338 Gene3D - 6 258 IPR015943 GO:0005515
Seca2g05196 1338 MobiDBLite consensus disorder prediction 1232 1263 - -
Seca2g05196 1338 MobiDBLite consensus disorder prediction 1204 1220 - -
Seca2g05196 1338 SUPERFAMILY WD40 repeat-like 5 518 IPR036322 GO:0005515
Seca2g05196 1338 Coils Coil 764 784 - -
Seca2g05196 1338 Gene3D - 917 1165 - -
Seca2g05196 1338 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 313 IPR001680 GO:0005515
Seca2g05196 1338 SMART WD40_4 262 304 IPR001680 GO:0005515
Seca2g05196 1338 SMART WD40_4 1 39 IPR001680 GO:0005515
Seca2g05196 1338 SMART WD40_4 198 241 IPR001680 GO:0005515
Seca2g05196 1338 PANTHER TSET COMPLEX MEMBER TSTF 1 1261 - -
Seca2g05196 1338 MobiDBLite consensus disorder prediction 1322 1338 - -
Seca2g05196 1338 MobiDBLite consensus disorder prediction 1204 1338 - -
Seca2g05196 1338 Gene3D - 259 505 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05196 Seca-Chr2 138436604 138454591 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05196 - - gmx:100786844 2297.32