Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05195 ATGACTTCCACACTTCTGCCCCTCGCTACTTTGTTTCTGGTTTTCTCTGCTTCTTATCTCCAGATCGCTGGGGCCGAAGCAGAACATCTTACTAGTCTCAAGCTTAACTCTCGTATTCTTCAGGAGTCTATCGCTAAACAGATTAACGAAAACCCAGGGGCAGGATGGGAGGCTGCAATAAATCCTCGTTTCACCAATTATACAGTTGGACAATTTAAACGCCTTCTTGGAGTCAAACAAACGCCTAGGAAGGAACTGAGAAGCACACCTGTTGCAACTCATCCAAGATCATTAAAATTGCCAAAAAGTTTTGATGCAAGGACAGCTTGGCCGCAGTGTAGCACTATTGGAAAAATTCTAGAAGCAAAAAGCTCTTATCTGATCCTTGTGCTGATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTATCAGATCGATTTTGCATTCATTTTGACGTGAATGTATCTCTCTCAGTTAATGACCTTTTGGCATGCTGTGGCTTTCTCTGTGGGTCTGGCTGTGATGGGGGTTATCCCCTATATGCATGGCGACACTTAGCTCACTATGGTGTTGTCACAGAAGAGTGTGACCCGTACTTTGATCAAACTGGCTGTTCTCATCCTGGTTGTGAGCCAGCATATCCAACTCCGAAGTGTGTTAAAAAATGTGTAAAAGGGAACCTGCTTTGGAAGAAGTCAAAGCACTATAGTGTCAATGCATATAGGGTCAAGTCTGATCCCTACGATATCATGGCAGAAGTTTATAAGAATGGGCCAGTTGAAGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTTATCAACTAGGTGGTCATGCAGTAAAGCTGATTGGATGGGGAACAACTGATGATGGGGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGAGATGATGGTTACTTCAAGATCAGAAGAGGAACCAACGAATGTGGGATTGAAGATGATGTTACTGCTGGTTTGCCTTCCACCAAAAATCTCGTAAGAGAGGTGACTGACATGGATGTTGACGCTGATGTTTCATTCTGA 1107 0.4345 MTSTLLPLATLFLVFSASYLQIAGAEAEHLTSLKLNSRILQESIAKQINENPGAGWEAAINPRFTNYTVGQFKRLLGVKQTPRKELRSTPVATHPRSLKLPKSFDARTAWPQCSTIGKILEAKSSYLILVLMIQGHCGSCWAFGAVESLSDRFCIHFDVNVSLSVNDLLACCGFLCGSGCDGGYPLYAWRHLAHYGVVTEECDPYFDQTGCSHPGCEPAYPTPKCVKKCVKGNLLWKKSKHYSVNAYRVKSDPYDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGYQLGGHAVKLIGWGTTDDGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEDDVTAGLPSTKNLVREVTDMDVDADVSF. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05195 368 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Seca2g05195 368 PRINTS Papain cysteine protease (C1) family signature 134 149 IPR000668 GO:0006508|GO:0008234
Seca2g05195 368 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Seca2g05195 368 CDD Peptidase_C1A_CathepsinB 101 346 - -
Seca2g05195 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Seca2g05195 368 Pfam Papain family cysteine protease 132 345 IPR000668 GO:0006508|GO:0008234
Seca2g05195 368 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Seca2g05195 368 Gene3D Cysteine proteinases 30 354 - -
Seca2g05195 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 134 145 IPR000169 -
Seca2g05195 368 FunFam cathepsin B-like protease 2 33 353 - -
Seca2g05195 368 SMART pept_c1 100 347 IPR000668 GO:0006508|GO:0008234
Seca2g05195 368 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 340 IPR013128 GO:0008234
Seca2g05195 368 SUPERFAMILY Cysteine proteinases 43 348 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05195 Seca-Chr2 138424881 138430297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05195 K01363 - gmx:100788988 672.544