Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05177 ATGGCTGGGAGTGAAGCGAAAAAACCTCAGGCAAAGCAATCTGGTGCAAAGAAGAAGGAGGTGAAGAAAGAGACTGGATTAGGTCTCACGCATAAGAAGGCTGAAAACTTCGGAGAGTGGTATTCCGAGGTGGTTGTTAATGCGGAAATGATTGAGTACTATGATATCTCTGGTTGCTATATTCTTAGACCTTGGTCGATGGCAATATGGGAGATCTTGCAAGCATTTTTCGATCCAGAAATTAAGAAAATGAAAATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGCAAAAGGAGAAGGACCACGTTGAGGGATTCGCACCAGAGGTTGCTTGGGTGACAAAGTCTGGGGAATCTGATTTGGAAATTCCAATTGCTATTCGTCCAACTAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACACCGTGACCTGCCTTTGAAGCTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGACACACTGCCTTCGCAACAAAGGAGGAAGCAGATGCCGAGGTTCTTGAAATATTGGAATTATATAGGCGTATATATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACATCTCATTGTCTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAGAAGGGAGAAAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGTAGTCGAACTATGGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGCTACCTCCTAAAGTAGCATCAATTCAAGTCATTGTGATTCCCGTGCCATACAAAGATGCTGATACTCAAGGAATCTTTGATGCCTGTTCTGCTACTGTGAATACATTGTGTGAAGCAGGTATTCGTGCTGAGTCAGATTCTAGAGATAACTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGTCCAAAGGATTTAGCAAATAAGCAGGTTCGTGTTGTTCGACGTGATAATGGAGCAAAGATAGACATTCCTAATGCTGATTTGGTTGAGGAAGTCAAAAAGTTGCTTGATAATATTCAACAGAGTCTGTTTGATGTTGCAAAACAAAAACGGGATGAATGTATTCAGGTGATACATACATGGGATGAGTTTGTACAAGCTTTGAACCAACGAAAGATGATCTTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGTACTCCCTTTGATCAGCCAGAACTCCCAGAAGGTATAATCCTAGCTGTTAAAATGCACTAA 1497 0.4235 MAGSEAKKPQAKQSGAKKKEVKKETGLGLTHKKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEILQAFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSSRTMGVMVMVHGDDKGLVLPPKVASIQVIVIPVPYKDADTQGIFDACSATVNTLCEAGIRAESDSRDNYSPGWKYSNWEMKGVPLRIEIGPKDLANKQVRVVRRDNGAKIDIPNADLVEEVKKLLDNIQQSLFDVAKQKRDECIQVIHTWDEFVQALNQRKMILAPWCDEEEVEADVKARTKGEMGAAKTLCTPFDQPELPEGIILAVKMH. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05177 498 Gene3D - 431 493 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 PANTHER PROLYL-TRNA SYNTHETASE 5 489 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 FunFam bifunctional glutamate/proline--tRNA ligase 308 428 - -
Seca2g05177 498 Gene3D - 308 428 IPR036621 -
Seca2g05177 498 CDD ProRS_anticodon_zinc 303 490 - -
Seca2g05177 498 Pfam Prolyl-tRNA synthetase, C-terminal 437 487 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 Hamap Proline--tRNA ligase [proS]. 30 497 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 MobiDBLite consensus disorder prediction 1 24 - -
Seca2g05177 498 SUPERFAMILY C-terminal domain of ProRS 433 487 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 NCBIfam proline--tRNA ligase 31 485 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 CDD ProRS_core_arch_euk 36 297 IPR033721 -
Seca2g05177 498 SUPERFAMILY Class II aaRS and biotin synthetases 35 301 IPR045864 -
Seca2g05177 498 SMART ProRS_C_1_2 437 497 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 Gene3D Bira Bifunctional Protein; Domain 2 30 307 IPR045864 -
Seca2g05177 498 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 69 307 IPR006195 -
Seca2g05177 498 SUPERFAMILY Class II aaRS ABD-related 302 429 - -
Seca2g05177 498 PRINTS Prolyl-tRNA synthetase signature 88 106 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 PRINTS Prolyl-tRNA synthetase signature 159 167 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 PRINTS Prolyl-tRNA synthetase signature 169 180 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 PRINTS Prolyl-tRNA synthetase signature 129 140 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca2g05177 498 FunFam Bifunctional glutamate/proline--tRNA ligase 29 307 - -
Seca2g05177 498 Pfam Anticodon binding domain 314 410 IPR004154 -
Seca2g05177 498 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 129 295 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05177 Seca-Chr2 138200289 138205333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05177 K01881 - gmx:100782067 969.533