Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05176 ATGGCTAACCCAACACAACCTAATGTTGGGTTCATCCCTCCAAACCCAGACAGACAGAGTCCAAACCCTGAGAAAAGTCCAATTCCGCCTCCTCCTAGTTTTGCAGCGACACCTAGATTTCCTCCACCAAAATTACATTTACAGCAAGATCAAGCTTCTCCCCATTCCACTAAAACCCCAAACCCAGCCAATGGGGTTACAACTGGCAGTCTAGTTCCTCACCTGAGCACCCCTCCTGGACCCCCTGTCTTCACATCACCTGTCCGTCCAGCTGCTGTTCCTTTTCGCTCATCACCTGCATCGCCTCAGCCACTTGCCTTTTCTTCAGCCCCTTCTTTGCCAACATCATCACCGCCCCAATATTCAAATGGATCATTTGAGTTGCAGCCCCAAGTTTCTGAGAGCATAGAGGACCGTGTTCCTGTTGGGGAGTCATCCTTTGTTCTTTTTTCAGCTCACAAGGTATTGAAACAGAAGAAACAGGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAATGGGCCCTCAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGTTGTGGAGCATATGCAAATATATATTGCAACATATTGCTTGGATCAGGTCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGATGCTGAGTACATTGCACATAGCAAGGAAGATCTTCAAAGATTTCCAGAACTTGCTTCGCCCATGGTTGACTATATTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTAATAGATGAATGTCTAGATGAACCTCACTTGCACCATCTTCAGAGCTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTGTACTATATGGCCGTACTGTATCAGTGTATGACTTTTCAGAAGAATCAGTTGCATCTGCTGATGTGCTTCCTGGGGACAAATCACCAAGTCAAGAATCTTTGAAAGCTTTGATTTATGGCACTGGCATATATTTGTCACCAATGCATGCTTCACTGACTGTAGCACATTCCATATTTTCATCATTGAGGCCATATAAGTTGAACATACCAGAAGCTTCAAGAGATCGGTGCCTAGGAACTGCCGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGCAGATCTGTCCCGAGGGGTAGTCAAAAGACCAGGGGGCAATAGTAGAATTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGCCACCCTAATTATCCTTATATGGAAAAGACAGCATTAAAATGGATGGAGAATCTAGGTCGTGAGGCTCATCGACACAATACTGTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCTTCAGGTGGTGTTTTGGTTCTTCACGATGATTTTGGAGAAGCCTTTGGTGTTAACTTGCAAAGGGCATCTGCCAGATCAGCAGGATCTCATGGATTGTTAGAATTGCGCACATCAGATGATATACTCATTACTCAAGTTGTGGGTCCTGGGGAAGAGTCACATGTAGACACCCATGAAACATTTAAAAATGACACTGCCCTTTATATTCAAATGCTTAGTGTTGAAGAAACACAGAGCTTCTCTCTCTCCATGGAAACCAAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAGTTTGCAATTCAGTATTCGAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGACTGCCAACAGTAGATAGTATTTCAGGATATCTTGAGAGTGTTCAGGATGAAGTAGCGGCTGTCCTCATTGCAAAGAGAACTCTGCTACGAGCCAAAAACCATTCTGATGCAATTGATATGCGAGCAACAATAGATGAGAGAATCAAGGATATTGCTCTAAAATTTGGCTCCCAATTACCCAAATCAAAATTGCATTGTTTCCCAAAGGAGATTTCTCTATTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGCCATGAAGATGAGAGATCTGTTCTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTGGCTCCTCGTTGTTTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAGCTTGGAGCTGATGAAGGAAAAAGTGCTGCTGCTTTAGCTGCTTGCAGGACATTGGCTGAAGAGCTGACTGAGTTCCGTTTTCCAGCTCCTCGTATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGATATTTTGTCTCCCGACTCATACCAGCTCACAAGGATCCTCCTTATGAACAGGAGGCAAGATTCCCGCAGCTTAGATCATTGACATCAGAACAGCGGACAAAGCTAAAAAGCAGTTTTGTTCACTTCGATGATCCTAGTTTCTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCCCAACCAAGCTGA 2613 0.447 MANPTQPNVGFIPPNPDRQSPNPEKSPIPPPPSFAATPRFPPPKLHLQQDQASPHSTKTPNPANGVTTGSLVPHLSTPPGPPVFTSPVRPAAVPFRSSPASPQPLAFSSAPSLPTSSPPQYSNGSFELQPQVSESIEDRVPVGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSMGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDAEYIAHSKEDLQRFPELASPMVDYIQTGNKRPGFVPVSDSRMSAPVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDFSEESVASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLTVAHSIFSSLRPYKLNIPEASRDRCLGTAVEVALAIIQGPSAADLSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGREAHRHNTVVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETKGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISGYLESVQDEVAAVLIAKRTLLRAKNHSDAIDMRATIDERIKDIALKFGSQLPKSKLHCFPKEISLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELGADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKSSFVHFDDPSFCEWMRSLKVVPPQPS. 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05176 870 Pfam Sec23/Sec24 helical domain 622 718 IPR006900 GO:0006886|GO:0006888|GO:0030127
Seca2g05176 870 FunFam Protein transport protein SEC23 609 729 - -
Seca2g05176 870 CDD gelsolin_like 723 814 - -
Seca2g05176 870 FunFam Protein transport protein SEC23 270 516 - -
Seca2g05176 870 SUPERFAMILY Zn-finger domain of Sec23/24 183 254 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca2g05176 870 Gene3D von Willebrand factor, type A domain 270 516 IPR036465 -
Seca2g05176 870 SUPERFAMILY Helical domain of Sec23/24 621 721 IPR036175 GO:0006886|GO:0006888|GO:0030127
Seca2g05176 870 Pfam Sec23/Sec24 trunk domain 272 499 IPR006896 GO:0006886|GO:0006888|GO:0030127
Seca2g05176 870 Gene3D Sec23/Sec24 helical domain 610 729 - -
Seca2g05176 870 Pfam Sec23/Sec24 beta-sandwich domain 517 608 IPR012990 -
Seca2g05176 870 SUPERFAMILY beta-sandwich domain of Sec23/24 12 619 - -
Seca2g05176 870 MobiDBLite consensus disorder prediction 9 39 - -
Seca2g05176 870 CDD trunk_domain 264 508 - -
Seca2g05176 870 MobiDBLite consensus disorder prediction 101 126 - -
Seca2g05176 870 MobiDBLite consensus disorder prediction 49 74 - -
Seca2g05176 870 FunFam Protein transport protein SEC23 181 243 - -
Seca2g05176 870 Pfam Sec23/Sec24 zinc finger 190 228 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca2g05176 870 Gene3D Severin 738 832 IPR029006 -
Seca2g05176 870 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 153 867 IPR037364 -
Seca2g05176 870 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 723 863 IPR036180 -
Seca2g05176 870 SUPERFAMILY vWA-like 271 504 IPR036465 -
Seca2g05176 870 Gene3D - 180 243 - -
Seca2g05176 870 MobiDBLite consensus disorder prediction 1 126 - -
Seca2g05176 870 FunFam Protein transport protein SEC23 737 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05176 Seca-Chr2 138192215 138198136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05176 - - gmx:100781518 1555.81