Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05160 ATGAGAGTTTGGTTCGGGCAGATTGTTGTTTGGAAAGTGGCCCCTCAACATGATAAATCTTCAAGTACTCAAGAAGACCATGAACATCAGAGCATTTCATCCTCCAACTACAGCCTGCTAAAAGATAAACTGTATGAGGCGGTTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGGATAGCATGGTCGGATTGTGGATCTAAACTCGTATCTGTCTCTGATGATCGTAGTGCACGTCTTTGGGCTATTCCTATTGAAAGGGGAGATTTGTTGCACCATGATCCAATTGCCCTTGTATTATTTGGACATAATGCTCGAGTTTGGGACTGCTGTATTTCTGATTATTTTATTGTCACTGTTAGTGAGGATTGTACATGTCGTATATGGGGAGTTGATGGTGAACAGCTGCAGGTCATTAAGGAGCACATAGGAAGGGGTATATGGAGATGTTTGTACGACCCAAATTCGTCACTTCTTATAACTGCTGGGTTTGATTCTGCTATTAAAGTGCACAAGCCTCATGCTTTTCTGACCAGGGGTTTGGCAGCAGCACAAGGGTCCCCTGGCAGAACAGAGATGTTTTCCATTTGCATCCCTAATGTGTTGGAGCATATTGGGTTCATGGACAGCAAGAGTGAATACGTTCGTTGTTTGCGTTTTTCCTGTCAGGATTCTCTTTATGTTGCAACCAATCACGGTTATCTCTACCATGCTAAATTATGTGATGCTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAACGGGGCACCAATTATCTGTATGGACCTATTGTCCAAGGGCTCATTTGAACTTGACTCTGGTGCTGAGGATTGGATTGCCATTGGAGATGGTAAAGGAAATATGACAGTTATTGGAGTTACTAACAATGATTGTACTCCTACAGTAAGATTGAGCTTTACTTGGCCTGCTGAAATGGAGAGACAGCTCTTGGGTACTTATTGGTGCAAATCTCTTGGATGTAGGCATGTCTTCACAGCTGATCCTAGAGGAAGATTGAAACTCTGGAGGTTGCCTGACCCTTCACAATCTAATCTTCAGAGCTCCACGAGAAGTAATGGTGTGTCACATGTAGCAGAGTTCATATCAAGTTATGGAATGCGGATAATGTGTTTGGATGCATGCTTGGAGGAAGAGGTCCTAGCATGTGGAGATCTACGTGGTAACATGGTTCTCTTCCCTTTGCTAAAGAGTCTGGTGCTGGGGACATCTGTTACACAAGAAATGAAGATACCTCCAGTAAATCATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTTTGTGACTAAGCTTGATTACAATCAAATTGAGATAAGCTCAACTGGAGCAGATGGTTGTATATGTTATCTGGAATATGATAGAGAAATGCAGAATTTGCAATTTACGGGGATGAAACAAGTGAAAGAGTTGAGTTTGATTGAATATGTTTCTGTGGATAACAACTCTCGTGATATATTATCAAGCAGCTATGCAGTTGGTTTTGCTTCTGTAGATTTCATAGTATGGAACTTAGTTAATGAAAATAAGGTAGTGAAAATTCCATGTGGTGGATGGCGGCGTCCTCATTCTTATTATCTAGGTGATGTACCGGAGATGAAGAACTGCTTTGCCTTTGTCAAGGATGAAATGATACATATACATAGGCACTGGATTCATGATAGAGATGGGAAGATATACCCTCAGAGTTTGCATATGCAATTCCATGGGAGAGAGATACATTCCTTGTGCTTTATCTCTGAAGATATTCTTCTTGGAGATAATTATAAGCGTGCCTTATTTTCCAAATCAAGTTGGATTGCAACTGGATGTGAAGATGGAACTGTGAGGTTGACTTGGTACTCTCCTGGTACTGAAAATTGGTCCATGTCAAAATTGCTTGGTGAACATGTTGGAGGATCAGCTGTAAGATCAATTTGTTGCGTGTCAAAACTACACACCATTTCATCAGATACATCTGATGTACCTGATGGGAGGAGCAAACTGAATGCTGCTGCTGAGGACAAAGATAATCCAATCTTACTGATATCAGTAGGTGCAAAGCGTGTCTTAACTTCTTGGCTACTAAAAAATAGGAGGCTAGATAACAAAAATAACTTCCTAACTGATCATCAGTATAATTCAAAAGAAGTTGATGATCAAGTTTTGTCAAGTTTGTCTTCTTCAATGACATTCCAGTGGCTTTCCACTGATATGCCAGCCAAATATTCAATCACACACAAATATCCAGAAAATAATGTGGAGAAAGTAGTTGGTGTTGCTGAAAATGTTTCTAATACAAAAATTGATGCTGGACCTGGATCACTGTTTTCTGAAAGGGGAATGATGGACTTGGTCAGAGATAAACATGAGGATGACTGGAGATATCTTGCAGTAACTGCTTTTCTTGTTAAATGTGCTGGTTCCAGGATATCTGTCTGTTTTGTTGTTGTTTCTTGTTCAGATGCTACACTTATGTTACGAGCTTTAATTTTGCCCTTTCGCCTATGGTTTGATGTCGCATTACTAGTTCCTTTATTGGCACCTGTTTTGTCATTGCAGCATATTATCTTTCCCATATGTAGGCCTTATAAAGAAAACATCAAAGTTGGAAATGTTTATATCGTGATTAGTGGATCTACTGATGGGAGTGTTACATTTTGGGACCTGACTGACAGTGTTGAAGCATTTATGCAGCGAGTTTCAGATTGTGATGTGGAGAAGTTTTTTGATTGTCAAAAACGACCACGCACAGGGAGAGGAAGTCAGGGTGGTAGATGGTGGAGATCTTTAAGCAGTGGCATGTCAAAGAAAAGACAAGATAGTGGTCCTTTAAAAGCCAAAGAGGAGACCAAAAGCATCAGTTATGGTACACAAGGGACCTCTTCAGTGCCAAATGATTCTGAAGACGGCAAGATGGTTTGTTCTCAAGCCATGCATACAGCTCCCCCTGAGTTAGAAACTAAGACTGATAATTTGTCAGTGGAGATATGTGAAATACAGCCTCTTCACCTTTTGCAAAATATTCACCAATCTGGTGTTAACTGTCTCCATGTTTCAGAGATAAAGGGTGGCCAAAATACCGATAGTTGCCATGTGTACAGCATAATTAGTGGGGGTGATGATCAAGCACTTCATCATCTCATAGTTGAATCATCACCTAAATCAATAAATCTACATAATGGGATTTTGACCCTAGATATCCCACATTTGGTCTCTGAACCCAAATATGGAGAGGACATCAATTTTCAAAATAGGAGCAAAAATTATGAGATCAGATTCTTAAATTATGAAAAATTTCCCTCGGCTCACAGCTCTTCTGTGAAAGGTGTCTGGACAGATGGATCTTGGGTGTTTTCGACTGGACTTGATCAGCGGGTCAGATGCTGGCATCTTCACCAGAGTAAACTAATAGAACGTGCACATCTAATAGTTAGTGTACCAGAGCCAGAAACGATATCTGCTAGAGCTTGTGGCAGGAACCATTATCAGATTGCTGTTGCTGGAAGAGGGATGCAAATAGTTGACTTTTCAGGATCCTGA 3561 0.4066 MRVWFGQIVVWKVAPQHDKSSSTQEDHEHQSISSSNYSLLKDKLYEAVHVCKLIGHEGSIFRIAWSDCGSKLVSVSDDRSARLWAIPIERGDLLHHDPIALVLFGHNARVWDCCISDYFIVTVSEDCTCRIWGVDGEQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHKPHAFLTRGLAAAQGSPGRTEMFSICIPNVLEHIGFMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDAGGAQWNQLVQVSNGAPIICMDLLSKGSFELDSGAEDWIAIGDGKGNMTVIGVTNNDCTPTVRLSFTWPAEMERQLLGTYWCKSLGCRHVFTADPRGRLKLWRLPDPSQSNLQSSTRSNGVSHVAEFISSYGMRIMCLDACLEEEVLACGDLRGNMVLFPLLKSLVLGTSVTQEMKIPPVNHFKGVHGISSVSSVFVTKLDYNQIEISSTGADGCICYLEYDREMQNLQFTGMKQVKELSLIEYVSVDNNSRDILSSSYAVGFASVDFIVWNLVNENKVVKIPCGGWRRPHSYYLGDVPEMKNCFAFVKDEMIHIHRHWIHDRDGKIYPQSLHMQFHGREIHSLCFISEDILLGDNYKRALFSKSSWIATGCEDGTVRLTWYSPGTENWSMSKLLGEHVGGSAVRSICCVSKLHTISSDTSDVPDGRSKLNAAAEDKDNPILLISVGAKRVLTSWLLKNRRLDNKNNFLTDHQYNSKEVDDQVLSSLSSSMTFQWLSTDMPAKYSITHKYPENNVEKVVGVAENVSNTKIDAGPGSLFSERGMMDLVRDKHEDDWRYLAVTAFLVKCAGSRISVCFVVVSCSDATLMLRALILPFRLWFDVALLVPLLAPVLSLQHIIFPICRPYKENIKVGNVYIVISGSTDGSVTFWDLTDSVEAFMQRVSDCDVEKFFDCQKRPRTGRGSQGGRWWRSLSSGMSKKRQDSGPLKAKEETKSISYGTQGTSSVPNDSEDGKMVCSQAMHTAPPELETKTDNLSVEICEIQPLHLLQNIHQSGVNCLHVSEIKGGQNTDSCHVYSIISGGDDQALHHLIVESSPKSINLHNGILTLDIPHLVSEPKYGEDINFQNRSKNYEIRFLNYEKFPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHLHQSKLIERAHLIVSVPEPETISARACGRNHYQIAVAGRGMQIVDFSGS. 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05160 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 882 904 IPR001680 GO:0005515
Seca2g05160 1186 SMART WD40_4 573 626 IPR001680 GO:0005515
Seca2g05160 1186 SMART WD40_4 46 85 IPR001680 GO:0005515
Seca2g05160 1186 SMART WD40_4 96 133 IPR001680 GO:0005515
Seca2g05160 1186 SMART WD40_4 1094 1137 IPR001680 GO:0005515
Seca2g05160 1186 SMART WD40_4 135 175 IPR001680 GO:0005515
Seca2g05160 1186 MobiDBLite consensus disorder prediction 958 974 - -
Seca2g05160 1186 SUPERFAMILY WD40 repeat-like 6 352 IPR036322 GO:0005515
Seca2g05160 1186 Gene3D - 6 92 IPR015943 GO:0005515
Seca2g05160 1186 Gene3D - 93 312 IPR015943 GO:0005515
Seca2g05160 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Seca2g05160 1186 PANTHER WD REPEAT PROTEIN 5 1185 - -
Seca2g05160 1186 Gene3D - 874 1175 IPR015943 GO:0005515
Seca2g05160 1186 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Seca2g05160 1186 SUPERFAMILY WD40 repeat-like 332 1136 IPR036322 GO:0005515
Seca2g05160 1186 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Seca2g05160 1186 Gene3D - 407 718 IPR015943 GO:0005515
Seca2g05160 1186 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 881 1148 IPR011047 -
Seca2g05160 1186 MobiDBLite consensus disorder prediction 931 945 - -
Seca2g05160 1186 MobiDBLite consensus disorder prediction 923 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05160 Seca-Chr2 138077842 138088267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05160 K24737 - gmx:100780968 2010.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05160 2 138077842 138088267 Seca2g05160 2 138077842 138088267 ECH