LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05157	ATGTCCAAACAAAGGTTGCAAGGTAAGGTAGCTATTGTAACAGGTGGAGCCAGTGGAATAGGTGCAGAAGCAGTGAGGGTATTCGTGGAAAACGGTGCATTCGTAGTTATAGCAGATCTTGAAGATGAATTGGGGCACAAAGTTGCAAGTTCAATTGGCTCAGAGGATAAGGTGTGTTACCATCACTGTGACGTGAGAGATGAGAAGCACGTTGAGGAAACGGTAGCTTTCACGTTGGAGAAATATGGCAGCCTAGACATTTTGTTCAGCAATGCTGGAATTGCAGGTCCTCTGTCTAGCATACTTGATTTTGATCTGAATGAATTTGACAACACCATTGCTGTGAATGTTCGGGGTGTAGCAGCAACTATCAAGCACGCTGCACGTGTCATGGTGGCTAGAAAGACACGTGGATCTATAATTTGCACCGCTAGTGTGGCTGCTTCCTTTGGTGGATGTGCAGGTCATGATTATACCACATCCAAACATGGCATTATAGGACTTGTTCGCTCAACGTGTGGTGAGCTTGGTGCTTATGGGATCAGAGTCAATTCCATCTCACCATATGCAGTTGCCACACCTCTTACATGTAAAGCATTCGATGTGGAGCCTGGTGAAATTGAAGCTACTGGACTCTCTTTTGCTAATTTGCATGGAGTTACATTGAAGTCTACCCATATTGCAGAGGCTGCTCTGTTTCTTGCCTCTGATGAATCGGCTTATATTAGTGGACAGAACTTAGTGGTGGATGGAGGCTTCTCGGCTATTAATCGTTGTCTTCCTACCGTCACGTATTTCTGGAGCCTTGCACTCTACAAACCTTATAAATATAGGTTATTATCAAGGGATTTAACTCAGAATATAAAGGTCACATACAAGAGCTTTTATTTCCTGGTTTTGGGGATATATCTCTCATCAATCAAACAAGGAACTCACTCATTCACTGCAATGCTGAAGCAAAGGTTGGAGGGTAAGGTGGCTCTAATAACAGGGGCAGCTAGTGGGATTGGGGAAGAGACAGTGAAACTGTTTGCTGAAAATGGAGCATTTGTTGTTGCAGCAGACATTCAGGATGAACTAGGTTGTCAAGTTGTTGCTTCAATAGGCTCAGATAGAGTGACATATCACCATTGTGATGTGAGGGATGAAAATCAGGTTGAAGAAACAGTTAATTTCATTTTGGAAAAACATGGTCGCTTAGATGTCCTGTTCAGTAATGCTGGAGTAATAGGCTCTTTATCTGGAATCCTTGACCTTGATCTCAGTGAACTTGATAATACCATGGCTATAAATGTTCGTGGTGCAGCTGCTACAATTAAGCATGGTGCTCGTGCCATGGTTGCAAAGAAAATCCGTGGATCCATCATATGCACCACAAGTGTGGCAGCTACTATTGGTGGAACAGGTCCTCATGGTTATACCACATCAAAACATGCTCTTCTTGGACTGGTAAAATCAGCATGTAGTGAGCTTGGAGGTTATGGAATCAGAGTTAATAGCATCTCCCCTTTTGGTGTTGCCACACCTCTTGCATGTAGAGCTTTCAATCTTCAACCTCATGAAGTTGAAGAAAACAGCTGTTCCCAGGCTAATCTCAAGGGTATTGTGTTGAAGGCTAGGCACATAGCAGAAGCAGCTTTGTATCTTGCTTCTGATGAAGCTATTTATGTTAGTGGTCACAATTTGGTGGTTGATGGTGGCTTCTCAGTGGTTAATCCTACTTCTTCTACCACACCTGTTTACATGTAG	1749	0.4322	MSKQRLQGKVAIVTGGASGIGAEAVRVFVENGAFVVIADLEDELGHKVASSIGSEDKVCYHHCDVRDEKHVEETVAFTLEKYGSLDILFSNAGIAGPLSSILDFDLNEFDNTIAVNVRGVAATIKHAARVMVARKTRGSIICTASVAASFGGCAGHDYTTSKHGIIGLVRSTCGELGAYGIRVNSISPYAVATPLTCKAFDVEPGEIEATGLSFANLHGVTLKSTHIAEAALFLASDESAYISGQNLVVDGGFSAINRCLPTVTYFWSLALYKPYKYRLLSRDLTQNIKVTYKSFYFLVLGIYLSSIKQGTHSFTAMLKQRLEGKVALITGAASGIGEETVKLFAENGAFVVAADIQDELGCQVVASIGSDRVTYHHCDVRDENQVEETVNFILEKHGRLDVLFSNAGVIGSLSGILDLDLSELDNTMAINVRGAAATIKHGARAMVAKKIRGSIICTTSVAATIGGTGPHGYTTSKHALLGLVKSACSELGGYGIRVNSISPFGVATPLACRAFNLQPHEVEENSCSQANLKGIVLKARHIAEAALYLASDEAIYVSGHNLVVDGGFSVVNPTSSTTPVYM.	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05157	582	PANTHER	SHORT-CHAIN DEHYDROGENASE REDUCTASE	318	573	-	-
	Seca2g05157	582	FunFam	Short-chain dehydrogenase reductase	1	259	-	-
	Seca2g05157	582	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	138	146	IPR002347	-
	Seca2g05157	582	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	83	94	IPR002347	-
	Seca2g05157	582	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	473	492	IPR002347	-
	Seca2g05157	582	FunFam	Short-chain dehydrogenase reductase	313	573	-	-
	Seca2g05157	582	Pfam	Enoyl-(Acyl carrier protein) reductase	331	569	-	-
	Seca2g05157	582	Pfam	Enoyl-(Acyl carrier protein) reductase	15	254	-	-
	Seca2g05157	582	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	323	571	IPR036291	-
	Seca2g05157	582	ProSitePatterns	Short-chain dehydrogenases/reductases family signature.	145	173	IPR020904	GO:0016491
	Seca2g05157	582	Gene3D	-	1	267	-	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	83	94	IPR002347	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	158	177	IPR002347	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	217	237	IPR002347	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	179	196	IPR002347	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	10	27	IPR002347	-
	Seca2g05157	582	PRINTS	Glucose/ribitol dehydrogenase family signature	132	148	IPR002347	-
	Seca2g05157	582	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	7	255	IPR036291	-
	Seca2g05157	582	Gene3D	-	312	575	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05157	Seca-Chr2	138056121	138062136	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05157	322	567	Acyl Lipid Metabolism Gene Families	AT3G55290	30.682	1.21e-20	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05157	-		-	gmx:100811279	440.269