Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05124 ATGGAAGATTTAGGTTGTAACCGGTTTGATGGTCTCACCAATGCTGTGAGGAGGAAGAGGAGTCAAACTTCTCGCAGGCCCCGACCTGATTCACAGCCTGTTTCTGAAGGTCATGACTTGTCTCCCATGTCATCAACGCCGCCTTCAGAGGATGCTGGCAAGGTCTCCAGTGATGAAAATGCTGGTTATGATACTAATTCCAAGAGAAAAGAATTCAATCTTAACCATTGTGTCTCTCAGGCTTCCCCTTCTACTGGACGGAGTGGTTTATATAACAAACGCGCTAGTGAAGGTGTCCTTGCTCCAGCTAATTGGAAAGGTTCTAGCAAATCAAAGGATAGCTTGGATTCAGAGTCAAGAAATGCAGATATGTATGGTGGAAGGAATTCTGAGAGCTTGAGTTTGGGGCAGTTTGGTGCTTCTCAGGATGGATTGGGGAACGAGAATAGGGTTAAAAAGGTTAAACTGAAGGTTGGTGGTGTCACACGTACCATACAAGCCAACTCTACATCCAATGGTGCTTCAGGAAGTGGCTCGACTTCAAAGAGCTCTCGCTCATCGGATGCCTCCAGACCACGCCAAAAGCAACAGAGTAATTCAGACGATAATAATTCTCCTTCTGATAAGAGGAGTGGTCTCCAAGGCCTTCCGTGGAAGGATTTCTCAAGGGGTGGTTTTGGTCTTGGGAAGGAGGAGTCATTGATGGGGAGGGTATCCGGGAAGAACACATCTGGTAAGCAAGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGGGTACCAAAGAGACGTGTACTGGATGGGGAATTCGGTGATGATGATGATGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACATCAAAAGTTTCTGCAGTCTACAGAGATGAAGAAGAATTAAGCAAGAAACACCGAAAACTCTCTAGTGTCTCTAATTTGGAAAATGCTGCCACATCAAGATCAGGCAAAGACAGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGAGGAGTCAGGGTCTGATGGTGAGCTTGAAGATAAGAAAAAGAAGAAACAGAGGAAGGAATCTGTTGATGTGTTGATGGACAATAAGAGGGAAATGACTCTTACAACTCGTCAACGGGCCCTTCAATCAAGCAAAGATGCCTCTGCATCTGGTGCAAATTTAATCGAATTTCCCAATGGATTACCACCTGCTCCACCTAGAAAGCAAAAGGAGAAGCTTTCAGAAGAAGAGTTGCAATCAAAGAAAGCTGAGGCTGCCCAGAGGCGTAAAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCAGAAAAATACTTGGCCAAGATTCCAGTAGGAAGAAGCGAGAAGAGAAAATAAAGAAGCGCCAAGAAGAACTGGCACAGGAGAAGGCAGCCAATGCACGAATGCTTGCATCAAATACCATCAGATATGTGGTAGGTCCTACTGGGACAGTTGTGACTTTTCCTGAGGAAATGGGGCTCCCTCCCATATTTAACTCCAAACCTGTCAGTTATCCTCCACCTCGTGAGAAGTGTGCCGGTCCATCTTGTCCAAATCCATATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTTCAATGCTACAAGGCTGTCCAGGAGATGATAGCAGGCTTTAGGTTAGCACAGTTGTGCGTTGAGCGTTTGGTAGAGAGCTCATATTGCGGATTGTTCATTTGCAGGAATTTTATAGGAAGTAGAAAAATTACTCAAAATTCTCCTGTGAAGATGAAGGCCGTGTATGCTAATGAATTTTGGGCACCAGAGAGGAGTTCACGTCAGGGAATTTGGTCCATAAGGGATGATTTGCAAGTCCCATCTTCCCCGTCTTTCCCTGCATATGCACAAGGACAAGGACCACCTCCAGTGGTGCAGGAGCGTTTCCAGAGTGTTATTAGCCAGCTTTTTCAATATAGGATAATACGTTGCGGTGGAGCAGTTGATGATGATATGGCTAACATCATAGTTGCTCAGCTTCTTTACCTTGATGCTGTCGATCCTCAAAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGATCAGTTACAGCTGGCATGGCAATATTTGATACAATGAGGCATATCCGACCTGATGTGTCCACTGTTTGTGTTGGATTGGCAGCTAGTATGGGTGCTTTTCTGCTCAGCGCAGGGACCAAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATAATGATTCACCAACCGCTTGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGGTATCTCTCCTATCACACTGGCCAAAGTTTAGAAAAGATCAACCAGGATACAGACCGTGATTTTTTCATGAGTGCAAAAGAAGCCAAAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTACCGGCTGCAGAGGAGGGTAAAGATCGGGCTAGCATTTGA 2541 0.4494 MEDLGCNRFDGLTNAVRRKRSQTSRRPRPDSQPVSEGHDLSPMSSTPPSEDAGKVSSDENAGYDTNSKRKEFNLNHCVSQASPSTGRSGLYNKRASEGVLAPANWKGSSKSKDSLDSESRNADMYGGRNSESLSLGQFGASQDGLGNENRVKKVKLKVGGVTRTIQANSTSNGASGSGSTSKSSRSSDASRPRQKQQSNSDDNNSPSDKRSGLQGLPWKDFSRGGFGLGKEESLMGRVSGKNTSGKQGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELSKKHRKLSSVSNLENAATSRSGKDSKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDNKREMTLTTRQRALQSSKDASASGANLIEFPNGLPPAPPRKQKEKLSEEELQSKKAEAAQRRKMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQEKAANARMLASNTIRYVVGPTGTVVTFPEEMGLPPIFNSKPVSYPPPREKCAGPSCPNPYKYRDSKSKLPLCSLQCYKAVQEMIAGFRLAQLCVERLVESSYCGLFICRNFIGSRKITQNSPVKMKAVYANEFWAPERSSRQGIWSIRDDLQVPSSPSFPAYAQGQGPPPVVQERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPQKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLPAAEEGKDRASI. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05124 846 MobiDBLite consensus disorder prediction 37 53 - -
Seca2g05124 846 MobiDBLite consensus disorder prediction 280 310 - -
Seca2g05124 846 Pfam Clp protease 649 826 IPR023562 -
Seca2g05124 846 SUPERFAMILY ClpP/crotonase 649 824 IPR029045 -
Seca2g05124 846 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 627 827 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 Pfam PAPA-1-like conserved region 421 506 IPR006880 GO:0031011
Seca2g05124 846 MobiDBLite consensus disorder prediction 379 394 - -
Seca2g05124 846 SMART PAPA_1_2 421 506 IPR006880 GO:0031011
Seca2g05124 846 MobiDBLite consensus disorder prediction 351 378 - -
Seca2g05124 846 MobiDBLite consensus disorder prediction 1 471 - -
Seca2g05124 846 Pfam HIT zinc finger 522 553 IPR007529 -
Seca2g05124 846 MobiDBLite consensus disorder prediction 72 91 - -
Seca2g05124 846 Coils Coil 459 479 - -
Seca2g05124 846 Gene3D - 645 827 - -
Seca2g05124 846 MobiDBLite consensus disorder prediction 412 471 - -
Seca2g05124 846 Coils Coil 427 447 - -
Seca2g05124 846 MobiDBLite consensus disorder prediction 162 211 - -
Seca2g05124 846 CDD S14_ClpP_2 654 823 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 PANTHER INO80 COMPLEX SUBUNIT B 10 559 IPR029523 GO:0006338|GO:0031011
Seca2g05124 846 MobiDBLite consensus disorder prediction 248 269 - -
Seca2g05124 846 ProSitePatterns Endopeptidase Clp serine active site. 724 735 IPR018215 -
Seca2g05124 846 MobiDBLite consensus disorder prediction 321 337 - -
Seca2g05124 846 ProSitePatterns Endopeptidase Clp histidine active site. 746 759 IPR033135 -
Seca2g05124 846 FunFam ATP-dependent Clp protease proteolytic subunit 643 827 - -
Seca2g05124 846 MobiDBLite consensus disorder prediction 123 144 - -
Seca2g05124 846 PRINTS Clp protease catalytic subunit P signature 802 821 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 PRINTS Clp protease catalytic subunit P signature 693 713 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 PRINTS Clp protease catalytic subunit P signature 745 764 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 PRINTS Clp protease catalytic subunit P signature 653 668 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca2g05124 846 PRINTS Clp protease catalytic subunit P signature 724 741 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05124 Seca-Chr2 137689439 137698813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05124 - - gmx:100814323 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05124 2 137689439 137698813 Seca2g05124 2 137689439 137698813 ECH