Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05110 ATGGCTCCCTCGCGACGCAATACCAATGGTCGATCACCGCTCGTTAATCAACAGCGTCAAATCACTTCCTTCTTCTCCAAATTCACTTCTCCTTCTCCTTCTCTCTCCAAAACCAACCAAAAACTAAACCCTAATCCCACTCCAGACCCTAACCCTAGCCCTAGCCCTTGCCCTACCACGCCTTCACCTCTCAATCCCAAACCTCTTCTCCTCATCGGTGCTTCTACTCCACCTTCCTCTTTGCCTTCTCTCTTTGGTGAAGAGGTCGTTGGTAGAAGGATCAAGGTTTATTGGCCTTTGGACAAGGCCTGGTACGAAGGTATTGTCAAATCCTTCGATAATGCCACCTCCAAGCATGTGGTTCGATACGACGATGACGAAGAGGAAACCCTCGACCTTTCCAAGGAGAAGGTTGAGTGGCCTCAGGACTCCTCTTCGAAGAAGCTTAAACGGCTGCGTCGAGGCTTCCCTGCTTTAAGAAAAATGGTGATTGAGGACGATGATGAGGTAGAAGAAAGTCGCAAAGAGGAAGATGATGACGGTGATGACTCCAACGATGAAGATTGGGGGAAGAATGGTGTATTTGAGGATACTGGGAATGGTGAAGAAGAAGAAGATATGGAGTTAGAGGATGAAGACCATGTAGCAGCGAGTGCTAAAGGAAAGCCTAGCGGGAAAGTTGAGCCAAGAAAGCGGAAACTAGGTGGAGAAGAGAAACTGGAGCCAGCAAAAAAGAGTAAGAGCGGAACGGAAGTTGGTACTAATAAGGGAGCTTTCAAGTTCTCAGTATTGGAGCCTACTGGTAATTTGGATATTACAAAGACACCTAATGGCGCTGACAATGTTGCAACTGGTGATGCCTCTGAAAGATTTGCATCCCGGGAAGCTCAGAAATTGCGCTTTCTGAAAGTAGATCGCAGGGATGCCAAGCGAAGGCGTCCAGGAGATGAAAATTATGATTCAAGAACTCTCTACTTGCCTCCAGATTTCTTAAAGAGTTTGTCAGATGGCCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTCTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGCAAAAGAGCTTGACTTGCAATATATGAAGGGAGAACAACCTCATTGTGGATTTCCAGAGAGGAATTTTTCAATGAATTTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCCGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCTGTAGTTACAAAAGGCACATTAACAGAAGGGGAGTTGCTGTCATTAAACCCTGAAGCTGCATATTTAATGGCACTGACTGAGCACCCTGAAAACCATTCAAATGAAATTTCAGAGCGTACCTATGGTGTTTGTGTGGTTGATGTTGCCACAAGCAGAGTCATTCTTGGACAGTTTAAAGATGACTCGGAGTGCAGTGCCTTGTGCTGTATCTTGTCTGAGATCAGGCCGGTTGAAATTGTGAAACCTGCTAAAGTGCTTAGTGCTGAAACCGAGAGGGTACTGCAGAAGCATACCAGAAATCCTCTGGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGATAAAACTGTGGATCAATTGAAGAGAATTTACAGGAATACTAAAGATGTTAGTGTTGAAGATAGTGGGTTAGATTGCCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTGATGACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAACAGGCTTTCCTAGATGAGAGGTTACTTAGATTTGCACACTTTGAGTTGCTTCCATGTTCTAGTTTCTGCGGTCTTGCTTCAAAACCATACATGGTTCTTGATGCCGCAGCCCTAGAGAATCTTGAGATTTTTGAGAATAGTAGAAATGGAGATTCTTCAGGCACGCTCTATGCCCAATTAAATCAATGTGTTACGGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGGCCATTATGTCATGTGGAGTCAATTAAGGAGCGCCAGGAAGCTGTTAGAGGTTTGAAGGGAGATAATCTACCTGCTGCACTAGAATTTCGAAAAGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCGCGGACATTCTCTTCTAGTGAAGCTAGTGGAAGGAATGCTAACAAAGTGGTTCTGTATGAGGATGCGTCAAAGAAACAACTGCAAGAGTTCATTTCAGCTTTGCGTGGTTGTGAACTAATGGCACAAGCATGCTCTTCACTGGGTGTCATTTTGAATGATGTCAAATCTAGACAACTTAATCATTTGTTAACACCTGGTATGATTATCTCAATAAGTGATGCCTTTGACTGGGTGGAAGCCAATAGCTCTGGGCGTATAATACCTCATGCAGGAGTTGACAAGGAGTATGACTCAGCCTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTAAAGCATCTCAAGGAACAAAGGAAATTACTTGGAGATACATCAATCACTTATGTCAATATTGGAAAGGAGGCTTACCTATTGGAAGTGCCAGAAAATTTGTCTAGGAATATTCCTCGGGATTATGAGCTGCGTTCATCCAGAAAAGTAGGAAGACTGAGCTCTGAAAACTTTATGTGA 2709 0.4378 MAPSRRNTNGRSPLVNQQRQITSFFSKFTSPSPSLSKTNQKLNPNPTPDPNPSPSPCPTTPSPLNPKPLLLIGASTPPSSLPSLFGEEVVGRRIKVYWPLDKAWYEGIVKSFDNATSKHVVRYDDDEEETLDLSKEKVEWPQDSSSKKLKRLRRGFPALRKMVIEDDDEVEESRKEEDDDGDDSNDEDWGKNGVFEDTGNGEEEEDMELEDEDHVAASAKGKPSGKVEPRKRKLGGEEKLEPAKKSKSGTEVGTNKGAFKFSVLEPTGNLDITKTPNGADNVATGDASERFASREAQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLKSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNLEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTEGELLSLNPEAAYLMALTEHPENHSNEISERTYGVCVVDVATSRVILGQFKDDSECSALCCILSEIRPVEIVKPAKVLSAETERVLQKHTRNPLVNELVPIVEFWDADKTVDQLKRIYRNTKDVSVEDSGLDCLPDVLLELVKTGDDSRSALSALGGALYYLKQAFLDERLLRFAHFELLPCSSFCGLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIKERQEAVRGLKGDNLPAALEFRKALSKLPDMERLLARTFSSSEASGRNANKVVLYEDASKKQLQEFISALRGCELMAQACSSLGVILNDVKSRQLNHLLTPGMIISISDAFDWVEANSSGRIIPHAGVDKEYDSACKAVKEIESSLLKHLKEQRKLLGDTSITYVNIGKEAYLLEVPENLSRNIPRDYELRSSRKVGRLSSENFM. 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05110 902 SUPERFAMILY DNA repair protein MutS, domain III 645 892 IPR036187 -
Seca2g05110 902 PIRSF Msh6 2 901 IPR017261 GO:0006298|GO:0030983
Seca2g05110 902 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 338 896 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Seca2g05110 902 MobiDBLite consensus disorder prediction 125 254 - -
Seca2g05110 902 SUPERFAMILY DNA repair protein MutS, domain II 457 657 IPR036678 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 Gene3D MutS, connector domain 459 639 IPR036678 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 MobiDBLite consensus disorder prediction 1 44 - -
Seca2g05110 902 Pfam MutS domain III 648 780 IPR007696 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 MobiDBLite consensus disorder prediction 169 186 - -
Seca2g05110 902 MobiDBLite consensus disorder prediction 45 65 - -
Seca2g05110 902 Pfam MutS family domain IV 824 892 IPR007861 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 SMART TUDOR_7 86 144 IPR002999 -
Seca2g05110 902 MobiDBLite consensus disorder prediction 125 150 - -
Seca2g05110 902 Gene3D DNA repair protein MutS, domain I 293 453 IPR016151 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 FunFam DNA mismatch repair protein 292 454 - -
Seca2g05110 902 MobiDBLite consensus disorder prediction 1 81 - -
Seca2g05110 902 CDD Tudor_Agenet_AtEML-like 90 140 - -
Seca2g05110 902 MobiDBLite consensus disorder prediction 213 246 - -
Seca2g05110 902 Pfam MutS domain I 338 450 IPR007695 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 Pfam MutS domain II 471 615 IPR007860 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 FunFam DNA mismatch repair protein 800 897 - -
Seca2g05110 902 Gene3D - 642 795 - -
Seca2g05110 902 Gene3D - 87 139 - -
Seca2g05110 902 SUPERFAMILY Tudor/PWWP/MBT 89 129 - -
Seca2g05110 902 Gene3D - 800 892 - -
Seca2g05110 902 SMART DNAend 662 901 IPR007696 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 SUPERFAMILY DNA repair protein MutS, domain I 323 446 IPR016151 GO:0005524|GO:0006298|GO:0030983
Seca2g05110 902 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05110 Seca-Chr2 137554728 137560902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05110 K08737 - gmx:100811104 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05110 2 137554728 137560902 Seca2g05110 2 137554728 137560902 ECH