Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05075 ATGGCATCTGCACCTTCCATGTCAGTTTCGTTGGAATGCGTCAACGTATGCAATCTGTGGAGAGGGGATGGAAGCGGAAGATATGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGTTCTTACTGGGTTTCTTGCCAGCACGGCTCACCCTCATCACTCTTCATCCACGTTGAATGGGCGAAATGGAAGAAGGAACCGGTATAATTTTGCATGCGAAGCGTATAGTATAGTAGGTTCATATCCCGATGAATCACTCGATATCATACTTCTTGATGGAGTCTCTAGATCTATCTTGTCTAGAGTTGCTCCTAGAAGATGGCAATTATGTTGTTCTTCAGCCTTCTCCTTGGATACTGCCAGTGAGTTTTCCCCAGAAAGTTTGTGGGAGGATCTTAAACCTGTGATCTCATACCTTCCCTCTAAAGAACTGGAGTTAGTCCATAAAGCTTTTATGTTGGCATTTGAAGCTCATGATGGTCAGAAAAGGCGCAGCGGTGAACCCTTCATCATACATCCAGTTGAAGTTGCACGAATTCTTGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGACACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACAAAGGTGTCAAAGCTGGGAAAGTTGAAGTATAAGAATGAAAATGACTCCGTTCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATTATTGTCAAATTAGCAGACAGGTTACATAACATGCGTACTCTATCACATATGCCTCCACATAAACAGACTAGCATCGCAATGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAATGCTGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCAGACCTGTACAAAGAACATGAGAAAGAACTTTTGGAGGCAAACAAAATACTGGTAAAGAAAATCCAAGATGATCAATTCTTGGACCTTTTGACTGTTAAAACTGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAATCAAAAAGTATGATCAATGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAACCAAAGCCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCAGATTTGCTATCATGTTCTGGGGTTAATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCTAATGGCTACCAGAGTCTTCATACCACTGTGATTCCTTTTTTGTATGAGAGCATGTTTAGACTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCAATGCCCAGTGGTAAAAGCTCAAGAGGGAAGACAGTGTGTCTTAACAATGCCAACATTGCACTTAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTAGACACTATTACAAGAGATCTTCTGGGCAGTCGTGTCTTTGTGTTTACACCCAGGGGAGAGATAAAGAATCTTCCTCAGGGTGCAACTGTTATTGACTATGCTTATATGATACACACTGAAGTTGGCAACAAGATGGTAGCTGCAAAGGTATCACTCCCCTCATATTCGTGCAAATGGAATCAAGTGTTAGTCAGGAAAAGACAAATATAA 1869 0.4195 MASAPSMSVSLECVNVCNLWRGDGSGRYDCSLLSCAWKAPRVLTGFLASTAHPHHSSSTLNGRNGRRNRYNFACEAYSIVGSYPDESLDIILLDGVSRSILSRVAPRRWQLCCSSAFSLDTASEFSPESLWEDLKPVISYLPSKELELVHKAFMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELLEANKILVKKIQDDQFLDLLTVKTEVRAVCKEPYSVYKAVLKSKSMINEINQIAQLRIIIKPKPCIGVGPLCSPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAMPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEVGNKMVAAKVSLPSYSCKWNQVLVRKRQI. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05075 622 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
Seca2g05075 622 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 604 - -
Seca2g05075 622 Pfam HD domain 152 309 - -
Seca2g05075 622 Pfam TGS domain 565 603 IPR004095 -
Seca2g05075 622 Gene3D Hypothetical protein af1432 129 324 - -
Seca2g05075 622 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Seca2g05075 622 SUPERFAMILY TGS-like 552 604 IPR012676 -
Seca2g05075 622 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Seca2g05075 622 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Seca2g05075 622 SUPERFAMILY Nucleotidyltransferase 328 499 IPR043519 -
Seca2g05075 622 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Seca2g05075 622 FunFam GTP pyrophosphokinase (RelA/SpoT) 557 613 - -
Seca2g05075 622 CDD HDc 169 300 IPR003607 -
Seca2g05075 622 SMART hd_13 167 287 IPR003607 -
Seca2g05075 622 Gene3D - 558 621 IPR012675 -
Seca2g05075 622 FunFam GTP pyrophosphokinase RelA 130 325 - -
Seca2g05075 622 SUPERFAMILY HD-domain/PDEase-like 135 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05075 Seca-Chr2 137268031 137276700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05075 181 496 EF-hand Containing Proteins AT3G17470 29.518 1.22e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05075 K00951 - gmx:100786637 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05075 2 137268031 137276700 Seca2g05075 2 137268031 137276700 ECH