Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05036 ATGGAAACCAGTACGGCCATGGATGTCGAGGAACAACCTTCACCCAGCCCCAACAGCGTTAAACGCTTCGGCCTTAAAAATTCTATTCAAACTAACTTCGGCGACGACTATGTTTTCCAAATCGTCCCAAAGGATGATTGGAGTGCAATGGCGGTGTCGTTGTCTACGAATGCAGTGAAACTGTATTCACCTGTGGCGGGTCAATATTATGGAGAGTGCAAAGGTCACTCTTCAACCATCAATCAGATTCTGTTTTCGGGTCCTTCCAATCCCCATGTTTTAAGCTCATGTTCTTCAGATGGCACTATTAGAGCTTGGGACACACGAACGTTTCAGCAGGTTTCTACCATTCATGCTGGTTCTTCTCAAGAGGTCTTCAGCTTCTCTCTTGGAGGGCCTAATGGAAATTTAATTGCTGCTGGTTGTAAATCGCAGATACAATTCTGGGATCGGAGAAATAAGAAGCAAATTGCATGCCTAGAAGATTCTCATGTGGAGGATGTCACTCAGGTTCATTTTGTACCTGATGAACAAGGTAAGCTTATTTCTGCTTCAGAAGACGGGTTGATCTGCACATTTGATACCACTGGAGATATCAATGATGATGATCATCTTGAGTCAGTGATTAATGTGGGAACTTCAATTGCAAAGGTGGGGTTTTTTGGAGAGAGTTATAGGAAGCTTTGGTGTTTAACACATATTGAAACCTTGGGTATCTGGGACTGGAAAGATTGTAGAAATGAAGTAAACTTCTCAGATGCTCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTAAGTTCCTCCCTATTTTTGCTTAGTTTTTTGAACTGGAAAAGCATTTAG 849 0.4205 METSTAMDVEEQPSPSPNSVKRFGLKNSIQTNFGDDYVFQIVPKDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSSTINQILFSGPSNPHVLSSCSSDGTIRAWDTRTFQQVSTIHAGSSQEVFSFSLGGPNGNLIAAGCKSQIQFWDRRNKKQIACLEDSHVEDVTQVHFVPDEQGKLISASEDGLICTFDTTGDINDDDHLESVINVGTSIAKVGFFGESYRKLWCLTHIETLGIWDWKDCRNEVNFSDARTLASESWNLDHVSSSLFLLSFLNWKSI. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05036 282 Gene3D - 39 124 IPR015943 GO:0005515
Seca2g05036 282 Gene3D - 125 236 IPR015943 GO:0005515
Seca2g05036 282 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 110 - -
Seca2g05036 282 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g05036 282 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Seca2g05036 282 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Seca2g05036 282 Pfam WD domain, G-beta repeat 70 107 IPR001680 GO:0005515
Seca2g05036 282 SMART WD40_4 66 107 IPR001680 GO:0005515
Seca2g05036 282 SMART WD40_4 110 150 IPR001680 GO:0005515
Seca2g05036 282 SMART WD40_4 153 194 IPR001680 GO:0005515
Seca2g05036 282 PANTHER UNCHARACTERIZED 18 277 IPR039328 -
Seca2g05036 282 SUPERFAMILY WD40 repeat-like 38 249 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05036 Seca-Chr2 136954235 136958307 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05036 K24758 - gmx:100794786 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05036 2 136954235 136958307 Seca2g05036 2 136954235 136958307 ECH