Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05005 ATGGAATTACAGGAACCTTATCTGATAACGAAGCTCGAATCTGCTGAGAAGACGTGGAAAGATTTATCGGTGAAGCTTGCTGATCCAGACATTGTGTCTAATCCCAGTGAGTACCAGAAATTGGCACAATCAGTGAAAGAGCTTGATGAGGTTGTGTCCACATACAAGGGATTTAAGGACTGTGAGAAGCTGCTAGAAGAAACCAGAGCTTTAGCAAAGGATGCTGGCAATGATGAGGATATGGCTGAAATGATATCTTATGAAATCGATTCTTTGTCCAAGCAACTCTCAGAACTTGAAGACAAGCTTAAGGTTTTACTGCTTCCCAGTGATCCCTTGGATGCACGAAACATTATGCTTGAAGTACGAGCAGGTACTGGTGGTGATGAAGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAGATATAGTGAACGGAATTCTTGGAAGCATTTTCTTGTCTCAAGCACTATGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAACCGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCATCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGTGTACATACTTCTACTGCAACAGTGGCCATCATGCCTGAGGCTGATGAAGTTGAAGTCGTAATTGACCCAAAAGATATTGAATTGACAACGGCACGATCTGGGGGTGCTGGAGGCCAGAATGTTAATAAGGTTGAAACAGCAATTGATCTTTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAGGAGAGGACTCAGTCTAAGAACAAGCATCGCGCATTTCAGTTACTCCGAGCCAAACTATATGAAATTAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATCACAGGTTGGTACAGGAGCTCGATCAGAAAAAATTCGGACATATAATTATAAGGACAACAGGGTTACCGACCACAGATTGAAGATGAACTTTGAACTCACATCTTTTCTCGATGGTAACATTGAAGATGCTGTTCAGTCTTGTGTTGCAATGGAGCAAAAGGAGCTTCTGGAAGAACTTGCTGAGTCTGTAGGTGCTCCTGCTGGCTGA 1113 0.425 MELQEPYLITKLESAEKTWKDLSVKLADPDIVSNPSEYQKLAQSVKELDEVVSTYKGFKDCEKLLEETRALAKDAGNDEDMAEMISYEIDSLSKQLSELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKHFLVSSTMAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQSKNKHRAFQLLRAKLYEIKVREQQESIRNQRKSQVGTGARSEKIRTYNYKDNRVTDHRLKMNFELTSFLDGNIEDAVQSCVAMEQKELLEELAESVGAPAG. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05005 370 FunFam Peptide chain release factor 1 114 224 - -
Seca2g05005 370 Gene3D - 284 368 - -
Seca2g05005 370 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 234 250 IPR000352 GO:0003747|GO:0006415
Seca2g05005 370 Gene3D - 224 283 - -
Seca2g05005 370 NCBIfam peptide chain release factor 1 5 363 IPR004373 GO:0006415|GO:0016149
Seca2g05005 370 Gene3D - 2 112 - -
Seca2g05005 370 FunFam Peptide chain release factor 1 224 289 - -
Seca2g05005 370 Hamap Peptide chain release factor 1 [prfA]. 8 362 IPR004373 GO:0006415|GO:0016149
Seca2g05005 370 Pfam RF-1 domain 217 327 IPR000352 GO:0003747|GO:0006415
Seca2g05005 370 Pfam PCRF domain 16 210 IPR005139 GO:0006415
Seca2g05005 370 Gene3D - 114 223 - -
Seca2g05005 370 FunFam Peptide chain release factor 1 286 365 - -
Seca2g05005 370 Coils Coil 82 102 - -
Seca2g05005 370 SUPERFAMILY Release factor 17 358 IPR045853 -
Seca2g05005 370 SMART PCRF_a_2 70 185 IPR005139 GO:0006415
Seca2g05005 370 PANTHER LD18447P 5 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05005 Seca-Chr2 136706783 136713023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05005 K02835 - gmx:100777225 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05005 2 136706783 136713023 Seca2g05005 2 136706783 136713023 ECH