Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05001 ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGCATTTCAGGGAAAAGAACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCTATATCTGATGTCTCTAGTGATGTTACCATTGAAGTTGGAGCATCAACCTTTGCACTTCACAAGTTTCCTCTTGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTATTAGAAGCAAAAGATTCAAAAGTTTCACGCATAAGTCTCCCATCAGTTCCAGGTGGTGCAGAGGCATTTGAGCTAGCAGCCAAATTCTGCTATGGAATCAATGTTGACTTCACCCTCTCAAATGTTGCCATGCTACGTTGCACAGCACATTATTTGGAAATGTCAGAAGAATTTGCAGAAAAGAACTTAGAGATCAGAGTTGAAGCATATCTAAGAGAGACAGTGCTCCCTAATACATCAAGCACAATATTTGTTCTTCACCATTGTGAGATTCTTCTACCTATAGCAGAACAAATAAACCTTGTTAACAGGCTCATCAATGCAATTGCAAATAATGCATGTAAAGAGCAACTTACCTCAGGTTTGCTAAAACTTGACCACACTTTCCCTTCTAAAACCATCTCAACCATGGAACCAGAAACACCCTCAGATTGGTGGGGAAAGTCTTTCAATGTTCTTAATCTTGATTTCTTCCAGAGAGTTATGTCTGTTATGAAGTCAAAGGGATTAAAACAAGATGTGATCAGCAAGATTTTGATCAACTATGCACATAGTTCCCTTCAGGGGGTGGTCAAAGGAAGTTTACATGACATGGAACTGCAGAAGAAACAAAGGGTCATTGTTGAAACCATAGTTGGATTACTCCCAACTCAATCAAGGAAAAGTCCAGTTCCAATGGCATTTCTCTCATGTTTATTGAAAGCTGCAATAGCAACATCAGCATCAACTCCTTGTAAATGTGAATTGGAGAGGAGAATTGGTCTACAACTTGACCAAGCAATTCTTGAAGACATCTTAATTCCAACAATTTCACCTCAAAATACACACAGCACAATGTATGACACAGATTCAATCTTGAGGATCTTTTCTATTTTTCTAAACTTGGATGAGGAGGATGATGAAGATAATCACTTTGGAGATGAAAGCCAGATGATGTATGAGTATGAGTTTGACAGTCCTGGATCTCCAAAACAAAGCTCAATTCTGAAAGTATCCAAATTATTGGACAATTATCTTGCTGAAGTAGCACTTGACTCAAACTTATTCCCATCAAAATTCATAGCACTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATTAAGGACTCAGAACGGTATCGCCTATGCAAAACCATTGATTGTCAAAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGGCTACCAGTGCAGATGGCAGTTCAAGTTCTTTACTTTGAGCAAATCAGGCTACGAAATGCCATGAATGGAGGACACAACCAATTTTTCTTTGGTGGGATTCAGGGTCAGTTCCCTCAACGTTCAGGCAGTGGTGTAGGAAGTGGAGCCATATCCCCTAGAGATAACTATGCATCAGTTAGAAGAGAGAACAGAGAGCTGAAGCTTGAAGTTGCAAGAATGAGAATGAGATTGACTGATTTGGAGAAAGACCATGTTTCTATGAAGCAAGAGCTTGTGAAGTCTAATCCTGCTAACAAGTTGTTCAAATCATTCACCAAAAAACTAAGGGGAATGTCTTTTGCAAGTTTTCGAAGTTCATTGCCCTTTTCTGGGCTAATCAGACAGCTTGAGCAAGAGATGGAAACTGTGATTAAGGTGCTGCAGCCTGGACCCTTGGGAATCATAGAGCATAAGTTTTCTGCTGAGGAGATTCATAGGGCTAATACTACAGTCTCTAAAGCAGTAGCCAATTGGCGAAGAAATGCAACCCTGGGAGACAAAAACCATATTTTGAAAGACTATATTCACAAATGA 2019 0.3997 MGVVTLGELKPSISGKRTFRPSSSIRHATEWPISDVSSDVTIEVGASTFALHKFPLVSRSGRIRKLLLEAKDSKVSRISLPSVPGGAEAFELAAKFCYGINVDFTLSNVAMLRCTAHYLEMSEEFAEKNLEIRVEAYLRETVLPNTSSTIFVLHHCEILLPIAEQINLVNRLINAIANNACKEQLTSGLLKLDHTFPSKTISTMEPETPSDWWGKSFNVLNLDFFQRVMSVMKSKGLKQDVISKILINYAHSSLQGVVKGSLHDMELQKKQRVIVETIVGLLPTQSRKSPVPMAFLSCLLKAAIATSASTPCKCELERRIGLQLDQAILEDILIPTISPQNTHSTMYDTDSILRIFSIFLNLDEEDDEDNHFGDESQMMYEYEFDSPGSPKQSSILKVSKLLDNYLAEVALDSNLFPSKFIALAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQFFFGGIQGQFPQRSGSGVGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSNPANKLFKSFTKKLRGMSFASFRSSLPFSGLIRQLEQEMETVIKVLQPGPLGIIEHKFSAEEIHRANTTVSKAVANWRRNATLGDKNHILKDYIHK. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05001 672 Gene3D Potassium Channel Kv1.1; Chain A 21 131 IPR011333 -
Seca2g05001 672 PANTHER OS12G0117600 PROTEIN 34 581 IPR043454 -
Seca2g05001 672 SUPERFAMILY POZ domain 22 123 IPR011333 -
Seca2g05001 672 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Seca2g05001 672 Pfam NPH3 family 211 474 IPR027356 -
Seca2g05001 672 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Seca2g05001 672 ProSiteProfiles NPH3 domain profile. 211 498 IPR027356 -
Seca2g05001 672 SMART BTB_4 38 130 IPR000210 GO:0005515
Seca2g05001 672 FunFam BTB/POZ domain-containing protein At1g03010 16 134 - -
Seca2g05001 672 Coils Coil 538 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05001 Seca-Chr2 136678578 136685789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05001 1 448 EF-hand Containing Proteins AT2G47860 58.958 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05001 - - gmx:100776688 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05001 2 136678578 136685789 Seca2g05001 2 136678578 136685789 ECH