Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04993 ATGGGCACCGAGTCGAAGCCGAGCGTGGATGGATCATCATCAGTGCAACTGCAGAACGATGTGAAGAAGGTGGTAGTGGAGAGGCCTTACGATGTGTTTCTACGATTTCTCTGTCTCTCACTCACTCTTATCGCTACCATCATCGTTGGTGCTGACAAGGAAACTAAAACAATCTCCTACGCTGGAATGCAATTCACAGCCACTGCCAAATGGGAATACATGTCTGCTATCGTGTTTTTCTTGGTGTCAAACGCTATAGGATGTTCATATGCAGCAGTTTCTTTGGTGATCTCAGCGATAGCAAGAAGCAGTAGTACTGGAAATGATACTAAAACGGCAGCGTTTTTTATGCTAACAGTGTTAGACCTTGTAATGATGGCATTGTTGTTCTCAGCCAATGGAGCAGCTGGTGCAGTGGGAGTTTTAGGACAGAAAGGGAACTCACACGTGCAATGGATGAAGGTTTGCAATGTGTTTGATGCTTATTGTCGTCACGTCACTGCTGCTTTGGTTCTTTCTATCATTGGCTCCTCTGTCTTTCTGTTACTGGTGGTGCACTCTGTTTTCAAACTCCATTACAGAAAAAACTCAAATTTGCTAGATCCATAG 609 0.4433 MGTESKPSVDGSSSVQLQNDVKKVVVERPYDVFLRFLCLSLTLIATIIVGADKETKTISYAGMQFTATAKWEYMSAIVFFLVSNAIGCSYAAVSLVISAIARSSSTGNDTKTAAFFMLTVLDLVMMALLFSANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRHVTAALVLSIIGSSVFLLLVVHSVFKLHYRKNSNLLDP. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04993 202 Pfam Casparian strip membrane protein domain 30 177 IPR006702 -
Seca2g04993 202 PANTHER CASP-LIKE PROTEIN 1U1 26 192 IPR044173 -
Seca2g04993 202 NCBIfam plant integral membrane protein TIGR01569 33 190 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04993 Seca-Chr2 136600974 136602375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04993 34 171 Miscellaneous Gene Families AT3G16300 23.571 1.64e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04993 - - gmx:100817307 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04993 2 136600974 136602375 Seca2g04993 2 136600974 136602375 ECH