Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04989 ATGAAGAGAATGGCGTGCTCGTTCCCTGAGGAGGTCCTCGAGCATGTGTTTTCGTTCATTCAGTGTGACAAAGACCGAAACGCCATATCTCTGGTGTGCAAGTCGTGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTTTTCGTTGGGAACTGCTATGCGGTAAGCCCTATGATGGTTATCAAGCGGTTCCCTGAGGTGAGATCCATTGTGCTGAAAGGAAAGCCTCACTTCGCTGACTTCAATCTGGTCCCTGATGGTTGGGGCGGTTATGTTTGCCCTTGGATCGCGGCTATGTCTCGTTCTTTTCCATGGCTTGAGGAGATCAGGCTCAAAAGGATGGTTATCACCGACGAGAGCTTGGAGCTTATAGCCAAATCATTCAAGAACTTCAAAGTGTTGGTCCTTACCTCATGTGAGGGTTTTACAACTGATGGACTTGCCGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCAAGAGAGTGAAGTGGAGGACCTTAGTGGGCATTGGCTAAGCCATTTCCCTGATTCCTACACGTCATTAGTTTCACTTAACATCTCTTGCTTAACCAATGAGGTGAGTTTGTCTGCCCTAGAGCGCCTGCTTGGTAGGTGTCCCAACCTGCAGACACTCCGCCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACTTACTTAGCCGGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGCAGCAGCATTTTCTGGGTGTAAGCAATTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCAGTCTATCCCATATGCTCCAGGCTAACATCACTAAACTTGAGTTATGCTACTATTCAAAGCTCTGATCTTGTCAAGCTTATCAGTCAATGCCCGAATTTGATGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTGATGTCCTTGCTGCATCATGCAAGGATCTTAGGGAGTTGAGGGTGTTTCCATCTGACCCGTTTGGTTTAGAACCAAATGTTGCATTGACAGAACGGGGCCTTGTTTGTGTATCTGAAGGCTGCCCCAAGCTCCAGTCAGTTCTTTATTTTTGTCGTCAAATGTCAAATGCAGCTCTGAATACAATTGCACAGAACAGGCCCAATTTGACTCGTTTTCGCCTGTGTATCATTGAGCCTCGAACTCCTGACTATCTTACTCATCAGCCATTGGATTCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGGTCTTCGGCGCTTATCCCTATCTGGTCTTCTTACTGATCGTGTTTTTGAGTATATAGGGACTTATGGCAAGAAGTTGGAGATGTTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTCCATCATGTGTTGTCCGGGTGTGAGAATCTGAGGAAGCTAGAGATCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCACTTGTTCAGTGAGTTATGGAGCATGTAAGCTGCTGGGTCAGAAAATGCCCAGACTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAGTTGTCCTGTTGAGAAGCTTTATATATACAGGACGGTTGCTGGGCCAAGATTAGACATGCCTGGTTTTGTATGGACAATGGAAGATGATTCTTCACCAAGTCTTGAGTGA 1755 0.4729 MKRMACSFPEEVLEHVFSFIQCDKDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMMVIKRFPEVRSIVLKGKPHFADFNLVPDGWGGYVCPWIAAMSRSFPWLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLTNEVSLSALERLLGRCPNLQTLRLNRAVPLDRLPNLLSRCPQLVELGTGVYSTEMRPEVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYATIQSSDLVKLISQCPNLMRLWVLDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTERGLVCVSEGCPKLQSVLYFCRQMSNAALNTIAQNRPNLTRFRLCIIEPRTPDYLTHQPLDSGFGAIVEHCKGLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCENLRKLEIRDCPFGDKALLANAAKLETMRSLWMSTCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDSCPVEKLYIYRTVAGPRLDMPGFVWTMEDDSSPSLE. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04989 584 SMART LRR_CC_2 430 453 IPR006553 -
Seca2g04989 584 SMART LRR_CC_2 128 153 IPR006553 -
Seca2g04989 584 SMART LRR_CC_2 370 394 IPR006553 -
Seca2g04989 584 SMART LRR_CC_2 287 311 IPR006553 -
Seca2g04989 584 SMART LRR_CC_2 479 503 IPR006553 -
Seca2g04989 584 SMART LRR_CC_2 103 127 IPR006553 -
Seca2g04989 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Seca2g04989 584 SUPERFAMILY F-box domain 5 39 IPR036047 GO:0005515
Seca2g04989 584 Pfam F-box 6 46 IPR041567 -
Seca2g04989 584 CDD F-box_AtTIR1-like 7 44 - -
Seca2g04989 584 FunFam Transport inhibitor response 1 45 575 - -
Seca2g04989 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Seca2g04989 584 FunFam Transport inhibitor response 1 4 44 - -
Seca2g04989 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Seca2g04989 584 Gene3D - 1 44 - -
Seca2g04989 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 536 - -
Seca2g04989 584 SUPERFAMILY RNI-like 32 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04989 Seca-Chr2 136587871 136592198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04989 K14485 - gmx:100779021 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04989 2 136587871 136592198 Seca2g04989 2 136587871 136592198 ECH
Seca2g04989 2 136587871 136592198 Seca2g04989 2 136587871 136592198 PCT