Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04983 ATGTGGTGGTCCAGGAAGCTACAAGACAAGGTAGCACTGATCACTGGGGCAGCTAGTGGAATAGGAAAGGCTGCAGCAACAAAGTTCATCAATAATGGGGCCAAGGTTATTATTGCTGATATCCAACAAAAACTTGGCCAAGAGACTGCAAAAGAACTAGGACCAAATGCTACCTTTATAACTTGTGATGTTACCAAAGAGTCAGACATATCCAATGCTGTTGATTTTGCCATTTCTGAGTACAAACAGCTTGACATCATGTATAATAATGCAGGGGTACCCTGCAGAACTCCTCCAAGCATTGTTGACCTGGATCTGGCATTGTTTGACAAGATCATGGAAATAAATGTTCGTGGGGTTATGGCAGGCATTAAGCATGCAGCACGTGTTATGATCCCACGTGGAGCTGGGTCCATTCTTTGCACAGCTAGTATCACTGGAGTGATGGCAGGGATGGCTCAACACACTTACTCAACATCCAAGTTTGCTGTTATAGGCATTGTTAAATCTGTGGCTTCAGAGCTATGTAGGTATGGAATCCGAGTCAATTGCATGTCACCGTTTGCTATTCCTACTCCTTTTGCCATGGATGAAATGAGTCAGATATATCCCCATCTAGATGCTCAGAGACTTGTAGACATTCTTCATGATGTTGGTGTCCTAAAAGGAGCAAATTGTGAACCCAATGATATTGCTAATGCAGCACTTTATCTTGTATCTGATGATGCCAAGTATGTTAGTGGACATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAGCTTGGAGTTTCCAGCTCCAGATCAAGTGCAGTAG 819 0.4286 MWWSRKLQDKVALITGAASGIGKAAATKFINNGAKVIIADIQQKLGQETAKELGPNATFITCDVTKESDISNAVDFAISEYKQLDIMYNNAGVPCRTPPSIVDLDLALFDKIMEINVRGVMAGIKHAARVMIPRGAGSILCTASITGVMAGMAQHTYSTSKFAVIGIVKSVASELCRYGIRVNCMSPFAIPTPFAMDEMSQIYPHLDAQRLVDILHDVGVLKGANCEPNDIANAALYLVSDDAKYVSGHNLVVDGGFTSFKSLEFPAPDQVQ. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Seca2g04983 272 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Seca2g04983 272 Gene3D - 3 264 - -
Seca2g04983 272 FunFam Short-chain dehydrogenase reductase 1 262 - -
Seca2g04983 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 258 IPR036291 -
Seca2g04983 272 Pfam Enoyl-(Acyl carrier protein) reductase 16 258 - -
Seca2g04983 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Seca2g04983 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Seca2g04983 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Seca2g04983 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Seca2g04983 272 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04983 Seca-Chr2 136460396 136462725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04983 5 259 Miscellaneous Gene Families AT4G05530 31.154 3.29e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04983 - - ccaj:109796618 466.463