Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04982 ATGCTGTGCTTTGAAACAAGATTAAAAATTATCAGAGAAAAGGAAAACGAAGTTGCCATGCCAGTGCCTAAGGCCTATGCCTTTTGTTCTTCGCCTCACTCTCAACCTTCATCGCCACCTCCTGGAGATAAAGTCAAAGGTGCAAATGGAGATGAGAAGTTTCAGGAAACTGAGATCTTTGAGGACACCTTAGTGATCAATAGTCCCTTCACTGAAACTGAGGTGGAAAATCTCAATCTGGATACTGAGGTTGTAGAAGATTCGGAACCTGTAGAGAACATGGCAACCGGTCCAATGTGTGAGTATGAACAAGAAGTGGTCCTTGATAGTGAGGATGATGAAATGAATAATACAAGCGCAGTAACTGTTGCCAAAGGATTTCTTGTGGGTGAAACTAGTCCAATAGTGATAAATCTTTCAATGCGCTTCCAGAAGAGACGGCCTAAGTCACCGTGTGAGCAAGCAGATTCAAATGCCAGCACTTTTGGGAAATCTGCTACTGGGGTCAAAGGGGCTTCAATTGATGCTCAGAGCTTTGATGACAACAACCATCTATATCCACATGTAAGGTCAAATCACATTCACTCACCAGAGCCTGGGGATTCAACCCAAGCTGCTCTAGGTTTCGTGGATCAGTACTTGTCATCACATGATGTGGACTTGCTTCGTGGAATTCATTACGGAAAGATCACTAGGGAGAAATCTCCTCATGTCCTGAGTGCAAGAGGACCATTAAATCTGGCTAAGAAAATTAAAGCTCGAACTCAAAATGAAGAAAAAGAACCTTTCAAGTGGGTTGACTGTGACCAAAATGACAAAGAAGCTGATATCTTTTGTCAAAAAAACGAAGCATCTTCAGATTTTGGAAGCTGCAGAAAGACATATAAGAGAAGAAGACAGAAAAGAGATGACCATCTTCAGAACCAAGGAAACTGTAATGCAGGTAATAGATGTGACAAGTTAGTCCAGGTACCAAGAATGGCAACTGAAAATAATAACTCTCTCATGGAGTTGGATGCTGAGTCGAGTGCTATAAGAGAGAATGTTAACGTTTATTCCAGTGTAGCACATACCGAAGACATGTCTGATATTGGTTTAGACACTCAAATAGCAGCTGAAGCTATGGATGCATTAGCCTATGCGCCCCCTCCTGGCTTCCATTTCGATGATTCTCACCAACCAGAGAATGCATTTGATGTCTCTTTGAGCAATTTGAATGGAGCCCATCTGAAAAATTCTTCATATAGGCAGAGTCCCGGTTTACATTCTGTCACACTAAAATCAAATAAGAGAAATGTATCTTCCTGTAGATTTAGTAAAGTAACTGCTAGTCCCTCTTGCAAGCACATTGACAATCAGGAGCCCAATCCTGTCGCAGTGAAGATGAAAAGAATGACGAAAAGCAAGTCAACTGTTGAGGGAAAGTTTAAAAATAATGCTAGTTCACCAATATGCAGTGAACATGTATCACCTGAAGAGGTTTGCTCACTAGGAAAGTATTTAAATTTTCAACCGGGTGCCAAAGAACCCAGGAATTGGAATGAAAGCAGATGGACAAGGATCAAAGATCAACCAAACCATCAAACAGAGAGGAACAATAATGTGAAGGAGAAGGATATTCTTAGACACAAGAGGAAGGGGAATGGTTTAGTGGCTGATCCAGTGAAATTGGGTGTTAGGACAAAACATTTTAAATTGCCTACCAATTCATCTGGGGTGGCTAGGAAGAGCAGGTCGAATCATCAGGTTCAAGTTAGTCCACGGGTATCTGCAACCAGCAGTTTTTCAAGAATTGATTCTTGGGTTTACCCAAAAAGACCAAGAGGGAAAAGAAAGCGGGCTAATTTGCAAATCAATCTCAATGCACCTACAGCTTTGTGTATTGATGGAAAAGAAAGCAACGTCTACTCCACTAGAAGTCTCGAAGGCCAAGATGTGGATAAATTATGTTTTCCTCACACCTGTCCACCTTGCAATGCTTCATGTATTGTCAATGGCAGATGTTTGTTACAGGGGAACTCTGTTCAACCAGGTTCAGCGGGTGATGCCATGAAATCTGCAAACTTGCATGATACGCATCCCTTATTGCTGGCACATGTTGAAATATCCTCAAACAAGAGCACTGCACAATCAAGTTCAGAAATTCCAGATACAGTTGGCTCAAGTGAAGGCATAAAGATTTCAAATGCTAACCATGCACACAATGAGCATCACAAAAAGCCATGCGACAAAAACCTTCCGAAGTCTTCGCTTTTGAAGGAGCTTATCAGATTAGGAGTTCCTGAGTCCACCTCAGATATGATATGGAGAGATCTGAGACATCGAAGAGACATGACATGTGTTCGAGTTCTGTTTAGCCAACATTTGGATGACAGTGTCATCAAGCAGCAAAAAAAGATCTTGGCACGTCTTAATATATCTATTGCATCAAGCTCAATGGAGGCCACACATTTTGTAGCAGAGAAATTTACACGTACAAAGAATATGTTGGAAACAATGGCTCTTGGGAAACCAGTGGTGACGCACTTATGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGATGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAGTATGCCTGTTTCTCTTGCTCGAGCAAGACAGAAGCCTCTCCTGAAGGGTAGGAGAGTCTACATCACACCACACATTAAACCTGATAAGGAAGTGGTCTCAAGCTTGGTCACAACTGTTCATGGCCAGGTAGTTGATGATAGTCAGATATGTTCAGACAAGAATGGTAATATCTTAGATGATCTGCTGATTCTTTCTTGTGAAGACGATTATGCAATGTGCCACCATTTCCTTAAGAGAGGAATTGCTGTTTACAGTCCAGAACTTGTTCTGAATGGAATTGTAATCCAAAAATTGGAACTTGATAGGTATGTTGATATTTGGAAGTCATACATCAACTCTTCACGAATCAGGTTACAAGGATCCACCCAATCACATCTAATCGGTTTGGGAAGGTTTACAGAAGGCGTTGAGGCTTTTACGTCGACAATAGCTGATTTTTTGACAGTATTGTTCTGGTCTTCGATAGAACTCAACCAATGGGAACTCTCGTCTTAG 3117 0.4132 MLCFETRLKIIREKENEVAMPVPKAYAFCSSPHSQPSSPPPGDKVKGANGDEKFQETEIFEDTLVINSPFTETEVENLNLDTEVVEDSEPVENMATGPMCEYEQEVVLDSEDDEMNNTSAVTVAKGFLVGETSPIVINLSMRFQKRRPKSPCEQADSNASTFGKSATGVKGASIDAQSFDDNNHLYPHVRSNHIHSPEPGDSTQAALGFVDQYLSSHDVDLLRGIHYGKITREKSPHVLSARGPLNLAKKIKARTQNEEKEPFKWVDCDQNDKEADIFCQKNEASSDFGSCRKTYKRRRQKRDDHLQNQGNCNAGNRCDKLVQVPRMATENNNSLMELDAESSAIRENVNVYSSVAHTEDMSDIGLDTQIAAEAMDALAYAPPPGFHFDDSHQPENAFDVSLSNLNGAHLKNSSYRQSPGLHSVTLKSNKRNVSSCRFSKVTASPSCKHIDNQEPNPVAVKMKRMTKSKSTVEGKFKNNASSPICSEHVSPEEVCSLGKYLNFQPGAKEPRNWNESRWTRIKDQPNHQTERNNNVKEKDILRHKRKGNGLVADPVKLGVRTKHFKLPTNSSGVARKSRSNHQVQVSPRVSATSSFSRIDSWVYPKRPRGKRKRANLQINLNAPTALCIDGKESNVYSTRSLEGQDVDKLCFPHTCPPCNASCIVNGRCLLQGNSVQPGSAGDAMKSANLHDTHPLLLAHVEISSNKSTAQSSSEIPDTVGSSEGIKISNANHAHNEHHKKPCDKNLPKSSLLKELIRLGVPESTSDMIWRDLRHRRDMTCVRVLFSQHLDDSVIKQQKKILARLNISIASSSMEATHFVAEKFTRTKNMLETMALGKPVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPVSLARARQKPLLKGRRVYITPHIKPDKEVVSSLVTTVHGQVVDDSQICSDKNGNILDDLLILSCEDDYAMCHHFLKRGIAVYSPELVLNGIVIQKLELDRYVDIWKSYINSSRIRLQGSTQSHLIGLGRFTEGVEAFTSTIADFLTVLFWSSIELNQWELSS. 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04982 1038 ProSiteProfiles BRCT domain profile. 802 862 IPR001357 -
Seca2g04982 1038 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 782 862 IPR001357 -
Seca2g04982 1038 Gene3D BRCT domain 886 980 IPR036420 -
Seca2g04982 1038 MobiDBLite consensus disorder prediction 567 589 - -
Seca2g04982 1038 CDD BRCT_MDC1_rpt1 781 855 - -
Seca2g04982 1038 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 161 979 - -
Seca2g04982 1038 SUPERFAMILY BRCT domain 781 878 IPR036420 -
Seca2g04982 1038 MobiDBLite consensus disorder prediction 29 49 - -
Seca2g04982 1038 MobiDBLite consensus disorder prediction 147 166 - -
Seca2g04982 1038 MobiDBLite consensus disorder prediction 706 725 - -
Seca2g04982 1038 CDD BRCT_PAXIP1_rpt6_like 887 973 - -
Seca2g04982 1038 Gene3D BRCT domain 770 885 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04982 Seca-Chr2 136452976 136458786 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04982 - K14972 gmx:102659913 1351.65