LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04978	ATGACAGGGCCAGTGATTGTGACAAAGGGTGGTGGATGCGGTGGTGGAAAGGGAAGGAAAGGAGGAAGAGACGCCGAAGAAGACCAAAATCAGGTGTCACCGGCAGCGTTTCTGTTGGCTGCTCTGAGAAAATCAATGGTGGCGTGCAGTGTGGATAGTCCTGAAGATGTTATCTCAGCCGTTCATCCCATGGAGATTGGATGGCCCACCAATGTTAAGCATGTTAGTCATGTCACCTTCGATCGCTTCAATGGTTTTCTGGGTCTTCCTCTTGAGTTAGAGGTGGATATCCCTGCTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGTGTCCCCACTATTTTACTGCAAATGCAGGAGCGGTTATATTCACAGGGAGGCCTAAAGGCTGAAGGTATATTTCGAATAAACCCAGAAAACAGTCAAGAGGAGCATTTGAGGGACCAGTTGAATAGAGGCATTGTGCCAGATGACATTGATGTCCATTGCTTGGCAGGCCTAATTAAAGCCTGGTTCCGAGAGCTTCCTTCAGGAGTGCTAGATGGTCTTTCCCCTGAGCAAGTTCTTGAGTGCAACACAGAAGAAGAATGTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCAGCATTGCTTAACTGGGCTATTGATCTCATGGCTGATGTTGTAGTAGATGAGGAGTATAACAAAATGGATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGATGTCTGATCCACTAACTGCTCTGATGCATGCGGTTCAAGTGATGAATTTACTAAAGACATTGATACTGAAGACACTTAGAGAACGTGAAGAAACAACAACAGCAGGATATTCACCCATGTCATTTCATTCATCAGAATCAGAATGCCAATCTGAGGATGACTATGACAGTCAGCAAGAAATGGATACAAGTGGTGAATTGAGAGGGACCAAGTCAGATTATGAAGATCATGATGATAACTACAGCCATAGCATTGATGAGGAAGAGGAGGAGGCTGCATCTGTGAGTGAGATAGAGGAATGCTTCTTGAAGTGGTTGGATGAGAACACAAAAGGATTCTCAGAAGTAGAACCTGAAGGGTATTTGCAAGAGGAATTAGAGAGCCCCAGGAGTTGCTCTGGCTATAAGGCGGAATCTGCTATATCATTTATTGATATCAAAACTGTGAATTCCTGCTCTAGTCCCTCTTATGGAGATGAGTCAGGAACAACTCTGACTACTGAGGGATCAAATGTTGACACAAGTAGTCCATCAATAGGAAGCACAGGCACCAGTGATGTGGAAATGATGGATAAATTTATAGATTCTGTTTCACTGGTGCCACTGTTTGCATCTAGTTAA	1407	0.4414	MTGPVIVTKGGGCGGGKGRKGGRDAEEDQNQVSPAAFLLAALRKSMVACSVDSPEDVISAVHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVDIPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLQMQERLYSQGGLKAEGIFRINPENSQEEHLRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEECVELVKQLKPTESALLNWAIDLMADVVVDEEYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETTTAGYSPMSFHSSESECQSEDDYDSQQEMDTSGELRGTKSDYEDHDDNYSHSIDEEEEEAASVSEIEECFLKWLDENTKGFSEVEPEGYLQEELESPRSCSGYKAESAISFIDIKTVNSCSSPSYGDESGTTLTTEGSNVDTSSPSIGSTGTSDVEMMDKFIDSVSLVPLFASS.	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04978	468	CDD	CRIB	64	94	-	-
	Seca2g04978	468	ProSiteProfiles	CRIB domain profile.	66	79	IPR000095	-
	Seca2g04978	468	FunFam	Rho GTPase-activating protein 5	96	289	-	-
	Seca2g04978	468	Gene3D	Rho GTPase activation protein	98	291	IPR008936	-
	Seca2g04978	468	MobiDBLite	consensus disorder prediction	294	308	-	-
	Seca2g04978	468	MobiDBLite	consensus disorder prediction	1	29	-	-
	Seca2g04978	468	Gene3D	CRIB domain	62	96	IPR036936	-
	Seca2g04978	468	MobiDBLite	consensus disorder prediction	294	355	-	-
	Seca2g04978	468	MobiDBLite	consensus disorder prediction	416	447	-	-
	Seca2g04978	468	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	111	292	IPR000198	GO:0007165
	Seca2g04978	468	SMART	RhoGAP_3	125	288	IPR000198	GO:0007165
	Seca2g04978	468	Pfam	RhoGAP domain	128	262	IPR000198	GO:0007165
	Seca2g04978	468	SMART	PBD_5	66	100	IPR000095	-
	Seca2g04978	468	SUPERFAMILY	GTPase activation domain, GAP	107	285	IPR008936	-
	Seca2g04978	468	Pfam	P21-Rho-binding domain	65	97	IPR000095	-
	Seca2g04978	468	PANTHER	MKIAA1688 PROTEIN	25	350	IPR044785	GO:0005096
	Seca2g04978	468	MobiDBLite	consensus disorder prediction	328	343	-	-
	Seca2g04978	468	CDD	RhoGAP	128	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04978	Seca-Chr2	136412783	136415781	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04978	-		K20642	gmx:100812700	715.301

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g04978	2	136412783	136415781	Seca2g04978	2	136412783	136415781	ECH
	Seca2g04978	2	136412783	136415781	Seca2g04978	2	136412783	136415781	PCT