Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04974 ATGATGCTCAGAATTCGAAGCCGTGACGGCCTTGAGCGAGTCACCGTCGACAATCCTCACAACGCAACAGTCTCTGTACTCAAGACCATAATCCAAAAACAGTTAGGAATCCCTATCCATAATCAAACCCTCTCCACTAACCAGAACCTTCTACTGGCTAAGTCGGTGGAAGATCTTCACCGATTCAGCGATATGTCGAACCCTGATGCACCTCTCTCGTCGCTGAATCTCTCTCACGGTTCAATCGTGTTCTTGGCCTACGACGGTGAGCGCAGGGTGGCGGGCCCCACTGCTTTCAGCCCTGCCGGTTCATTCGGGCGTAAGATGACGATGGATGATCTCATCGCGAAACAGATGCGGGTGACTCGACAGGAGAATCCGCATTGCGAGCTTGTTTCCTTTGACCGCGATTGTGCCAACGCGTTTCAGCACTATGTTAACGAAACGCTGGCGTTTGCGGTTAAGCGGGGTGGGTTCATGTACGGCACCGTTTCGGAGGAAGGGAAGGTTGAGGTGGACTTCATATACGAGCCACCTCAGCAGGGTACGGAGGATAATCTCATGTTTTTTAGGGATCCAGAGGAAGAAAAATTTGTGGAAGCTATTGCGGTTGGGCTGGGGATGAGGAGGGTTGGGTTTATTTTTACACAGACTGTGAGTCAGGATAAAAAAGATTATACTTTGTCCAATAGGGAGGTGCTTCAGGCTGCGGAGTATCATGCTGAGAGTGGGTTGAAGGAGTGGGTCACTGCTGTGGTTAAGCTTGAAGTGAACGAGGATATGGGTGCTGATGTTCATTTTGAAGCGTTTCAGATGAGTGATGTGTGCATTCGATTGTTCAGGGAAGGATGGTTTGACACTGATATTGGGGAGGATGATGATCCTAAGTTGTCTAAAATGAAGAAGGATGTGGTTGTTGGGGTTAAGGATACTAGAGAGGTTGATAATGATTTCTTCTTGGTCGTCGTCAAAATCTCTGATCATCAGGTAGGTCCTCTTTCATCCGCATTTCCCATAGAGAACCGGAATACTCAGGTGACAATGAGGGCACTGAAGAATCATCTTGAGCGGACAAAAAATCTTCCATTTGTGAAGCGAATTTCTGATTTTCATCTTCTTCTCGTATTAGCGAGATTTTTAGACCTTGCTGCTGATGTTCCTGCATTGACGGAATGTGTGCAGACACAGACTGCCATACCAGAAGGATACCAAATCCTTATTGAGTCCATGGCTAGCGCAGCTTGA 1245 0.4771 MMLRIRSRDGLERVTVDNPHNATVSVLKTIIQKQLGIPIHNQTLSTNQNLLLAKSVEDLHRFSDMSNPDAPLSSLNLSHGSIVFLAYDGERRVAGPTAFSPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGTEDNLMFFRDPEEEKFVEAIAVGLGMRRVGFIFTQTVSQDKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNEDMGADVHFEAFQMSDVCIRLFREGWFDTDIGEDDDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKISDHQVGPLSSAFPIENRNTQVTMRALKNHLERTKNLPFVKRISDFHLLLVLARFLDLAADVPALTECVQTQTAIPEGYQILIESMASAA. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04974 414 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
Seca2g04974 414 Gene3D - 1 101 - -
Seca2g04974 414 Pfam NPL4 family 158 282 IPR007717 -
Seca2g04974 414 ProSiteProfiles Ubiquitin domain profile. 1 85 IPR000626 GO:0005515
Seca2g04974 414 ProSiteProfiles MPN domain profile. 131 272 IPR037518 -
Seca2g04974 414 CDD MPN_NPL4 120 376 IPR007717 -
Seca2g04974 414 CDD Ubl_AtNPL4_like 1 85 - -
Seca2g04974 414 Gene3D Cytidine Deaminase, domain 2 138 313 - -
Seca2g04974 414 FunFam NPL4-like protein 1 1 101 - -
Seca2g04974 414 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 1 88 IPR016563 GO:0006511
Seca2g04974 414 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04974 Seca-Chr2 136364574 136369735 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04974 K14015 - gmx:100811623 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04974 2 136364574 136369735 Seca2g04974 2 136364574 136369735 ECH