Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04963 ATGGCAGCTTCCGAGGAAGAATGCTCTTCTGCTAAACCTGGTCCCTCTTCCTCTTCCTCCACCTCTCGCTACTACCTCTCCAAGTGCGTCCTCAGAGGAAGCGTCGTTCTTCAGGTCCTCTACGCTCGCATCCGTTCTCCCTCCTCCAACGACGTCGTTTTTGGCAAGGAGACATCTATAGAATTGGTGGTTATTGGTGAGGATGGGAATGTACAATCTATCTGTGATCAGCCTGTTTTTGGCACCATTAAAGATCTTGCCGTATTGCCTTGGAATGAGAAATTCCGTGCCCGTGATCCACAGATGTGGGGTAAAGACCTCTTGGTTGCTATATCTGATTCTGGGAAGCTATCTTTGCTCACATTTTGCAATGAAATGCACAGGTTTTTTCCTATAACACATGTTCAGCTGTCTAGTCCTGGAAATGCTAGGGATCTTCCAGGAAGAATGCTAGCAGTTGATTCCAGTGGTTGTTTTATTGCTGCCAGTGCATATGAAGATCGGCTGGCTCTGTTTTCTATGTCAATGACTAGCAGTGATATCATTGATGAGAAATATACTTATGTGATCTTTTTTGCTCAACTCCAGAGAATAATATATCCTTCTGAAAGTGAAGGGACTGTGAGTTCTTCCAGAAGCATCCAGAAAACCAGTATACGTGGTACTATTTGGAGCATGTGCTTTATTTCACAAGATTCCAGACAACCAAGCAAGGAGCGTAATCCTGTACTAGCTGTTATTATAAATAGGAGGGGAGCACTTCTAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACATACAATCTTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATTACATTGTTGAAGTTCCCAAGTCTCAGGGACTCGCATTTCTATTTAGGGAAGGTGATATTCTATTAATGGATTTAAGAGATCCTCGCAATCCATTTTGTATCTACAGGACTAGCTTAAACATTTTACCTAATTCCTTGGAAGAGCAGACTTACGTGGAAGACTCTTGTAAATTACACGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGCAGCTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTACTAATTCAGGTCACAAGTATGTATGCTCTTGGTGTTGGGAACCTGAAAATAATAAAGATCCTAGGATGATCTTTTGTGTAGATACTGGAGAATTTTTTATGATTGAAATTTTTTATGCTGATGGCCCTAAAGTTAATCTCTCTGAGTGTCTCTATAAAGGTCTACCATGTAAAGCACTTCTGTGGGTTGAAGGTGGATATCTAGCTGCTCTTGTAGAAATGGGGGATGGCATGGTCCTGAAACTGAAAGATGGAAGGTTATGCTATACAAACCCTATCCAAAACATTGCACCAATCTTGGATGTGGCTGTTGTGGATTATCATGATGAGAAGCAAGAACAAATGTTTGCTTGCTGTGGTGTGGCACCTGAGGGGTCATTGAGGGTTATTCAAAGTGGTATCAATGTAGAAAAGCTACTTAGGACTGCTTCTATATATGAAGGGGTATCTGGTACTTGGACTGTTAGAATGAAAGTTACTGATTCATATCATTCTTTTCTAGTTCTATCTTTTCTTGCGGAGACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCCAACCTAATGTCTGTACTTTGGCATGTGGCCTTGTGAGTGATGGTTTGCTTGTTCAGATCTACCAATCTACTGTTAAGCTTTGTTTGCCTACCAAGGCAGCTCATTCTGAAGGTATCCCCATGTCCTCTCCCATTTGCACATCTTGGTCCCCAGCCAATCTGAATATCAGTTTGGGGGTAGTTGGGCATAATTTCATTATTGTGTCAACCTCTAACCCATGCTTTTTATTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAGCATTTGGGACTGCAGAACGAATTATCATGCATTTCCATCCCTAGACAAAAAATTGAGAAAAAACAATCAAATTCAGCCATTTCCACAAATAATAGCGGCATCTCTTCTTTTATAAGTGGAGTGGATGTCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCTGTGGAAATTTGGTCTTTTACACCGGATGGAGGAGTTACTGTAGTTGCTTGTGGGACAATTTCATTAACAAATACAATGGGGACTGCTATAGATTTTTGTGTACCTCAAGATGTACGGCTTGTATTTGTTGATAAATATTATGTTCTTGCCGGATTGAGGAATGGAATGCTCCTTCGCTTTGAATGGCCAGCGGAACCGTCTCCTTCATCACCAATTAATGTGGTGGACACTGCTTTATCTTCTATAAATTTGGTGAATTCTGTGACTAAGGCTTTTGACAAGAGAAATGACCTTCCTTCCATGCTTCAATTGATAGCCATTCGTCGCATTGGTGTTACTCCTGTTTTCTTGGTGCCCCTGGATGATACACTTGATGCTGATATAATTGCTCTGAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTTTCCTATACTTCTATCTCATTTCAACCATCCTCACATGTGACTCCTGTGTGCTCTGTTGAATGTCCGAAAGGAATATTATTTGTTGCAGAAGACAGTTTACATCTGGTGGAAATGGTCCACAGCAAGAGACTTAATATGCGTAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCCTGTATCATAATGAAAGCCGGATGTTGCTTGTGATGAGGACTGGACTGAATTGTAGTACATGTTTGTCAGACATATGTTGTGTGGATCCCATAAGCGGGTCAGTACTATCGTCTTTTAGGCTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGGTTTGGAAATGAGCAGGTGCTTGTGGTTGGAACTAGTCTGTCTTCTGGTCCAGCCACAATGCCCAGCGGTGAAGCTGAGAGTGCCAAGGGTCGACTTCTTGTTCTCTGCCTTGATCATGTGCAAAATTCAGATAGCGGTTCAATGACATTCTGTTCAAGGGCAGGGTCAACATCTCAAAAAACTTCACCTTTCCATGAAATTGTTGCGTATGCTCCTGAACAGCTATCAAACAGTAGCCTTGGCAGCAGCCCGGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAATTTGGCAGTTCCGATTGGCTTATGCAACTACATGGCCGGGAATGGTACTTGCTATTTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATGCTTTCTATGTTTGTGGTTTCCCAAATGACACTCCTCGGAGAGTGAGACGGTATGCTATGGGAAGGACACGTTACATGATAACATCTTTGACTGCACATTTTACTAGAATTGCAGTGGGTGATTGTCGTGATGGTATCATTTTCTTTTCTTACCATGAGGAAGCAAGAAAATTGGAGCAACTTTACTGTGACCCATCACAGAGGTTAATTGCTGATTGCATTCTCATGGATGATCATACAGCTGTTGTTTCAGATCGTAAAGGAAGTGTTGCTGTTTTATGTTCAGATAATTTGGAAGCATCAGACAACGCAAGTCCAGAATGCAACTTGACAATAAGCTGCACTTATTTCATGGCTGAGATAGCTATGAGCATCCGGAAGGGCTCATATTCATACAGACTTCCAGCCTATGATGTTTTGCCAGGTGGAAATGCCCCCAGTGACTCACTACAAAATACTATCATTGCTAGTACTCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAGTATGAGCTCTTAGAAGCTGTGCAAGCAAGACTTGTTGTCCATCATTTGACTGCACCTGTTCTTGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCAGTTGGAGTACCCAAGATACTTGATGGTGACATGTTGACTCAGTTTCTGGAGCTGACAAGTATGCAGCAAAATACCATTTTGTCTTCGGATCCACCGGATATGGTAAAACCCAGTTTGAAGCCACTTCTACCTCCACATGTTTCTGTCAATCAGGTGGTTCAACTTCTTGAACGAGTTCATTATGCACTAAACTAA 4131 0.4149 MAASEEECSSAKPGPSSSSSTSRYYLSKCVLRGSVVLQVLYARIRSPSSNDVVFGKETSIELVVIGEDGNVQSICDQPVFGTIKDLAVLPWNEKFRARDPQMWGKDLLVAISDSGKLSLLTFCNEMHRFFPITHVQLSSPGNARDLPGRMLAVDSSGCFIAASAYEDRLALFSMSMTSSDIIDEKYTYVIFFAQLQRIIYPSESEGTVSSSRSIQKTSIRGTIWSMCFISQDSRQPSKERNPVLAVIINRRGALLNELLLLEWNVKAHTIFVISQYVEAGPLAHYIVEVPKSQGLAFLFREGDILLMDLRDPRNPFCIYRTSLNILPNSLEEQTYVEDSCKLHDVDDERFSVAACALLQLSDYDPMCIDSDNGGTNSGHKYVCSWCWEPENNKDPRMIFCVDTGEFFMIEIFYADGPKVNLSECLYKGLPCKALLWVEGGYLAALVEMGDGMVLKLKDGRLCYTNPIQNIAPILDVAVVDYHDEKQEQMFACCGVAPEGSLRVIQSGINVEKLLRTASIYEGVSGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLACGLVSDGLLVQIYQSTVKLCLPTKAAHSEGIPMSSPICTSWSPANLNISLGVVGHNFIIVSTSNPCFLFILGVRLLSAYQYEIYEMQHLGLQNELSCISIPRQKIEKKQSNSAISTNNSGISSFISGVDVNKTFVIGTHRPSVEIWSFTPDGGVTVVACGTISLTNTMGTAIDFCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPAEPSPSSPINVVDTALSSINLVNSVTKAFDKRNDLPSMLQLIAIRRIGVTPVFLVPLDDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHVTPVCSVECPKGILFVAEDSLHLVEMVHSKRLNMRKFHLEGTPRKVLYHNESRMLLVMRTGLNCSTCLSDICCVDPISGSVLSSFRLELGETGKSMELVRFGNEQVLVVGTSLSSGPATMPSGEAESAKGRLLVLCLDHVQNSDSGSMTFCSRAGSTSQKTSPFHEIVAYAPEQLSNSSLGSSPDDNSSDGIKLDENEIWQFRLAYATTWPGMVLAICPYLDRYFLASAGNAFYVCGFPNDTPRRVRRYAMGRTRYMITSLTAHFTRIAVGDCRDGIIFFSYHEEARKLEQLYCDPSQRLIADCILMDDHTAVVSDRKGSVAVLCSDNLEASDNASPECNLTISCTYFMAEIAMSIRKGSYSYRLPAYDVLPGGNAPSDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTSMQQNTILSSDPPDMVKPSLKPLLPPHVSVNQVVQLLERVHYALN. 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04963 1376 Pfam CPSF A subunit region 944 1329 IPR004871 GO:0003676|GO:0005634
Seca2g04963 1376 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g04963 1376 Gene3D - 35 467 IPR015943 GO:0005515
Seca2g04963 1376 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 29 1340 - -
Seca2g04963 1376 Gene3D - 508 905 IPR015943 GO:0005515
Seca2g04963 1376 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 675 IPR018846 -
Seca2g04963 1376 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 508 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04963 Seca-Chr2 136237142 136251126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04963 K12830 - gmx:100806799 2305.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04963 2 136237142 136251126 Seca2g04963 2 136237142 136251126 ECH