Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04959 ATGCGAAGACCGAGAAATATGAGACCAAATATCGTCTCTGAGGCGGGGGTGTCTACTAGATTGAATCAATATTGGGAAAGCATTCCATTCCTTACTTCTGCAGTGGTGGTTGTCTGTGGAATAATTTACTTGGTTTGTCTTTTGGTTGGATATGATTCCTTTGCTGAGATATGCTTCTTGCCCTCTGCTGTTGTATCACGGTTTCAAGTTTACAGGATTTATACCTCAATTCTTTTTCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGTTGGAGAGGATCATGGGTTCAGTTCGCTTGTTATATATCATTATTTTGTTGGCTACAAGCAATGCTATATTCCATGTTCTCATCGCACTGCTGGTGGCACACAATCCTTTTCTTACATATGATTACCTCATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTATTTTCGATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAAGCCTCCTCCTGGCTTTCATCATGTGTGAGACGTCCTAAATTTATTGTTTGCACTGGCGGAAATCCTTCCGGTTATATCCCTACACATACAAGCCAAAATTCAACAACTAGTGGAATACTTTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTGCTCAGTTGCAGTCAGTTGAAGACAGTAGGTTCCCTGGAAGGGGAAGGGCCCTTGGTTCTGGTCAAGGTCAAATGGCTTCTGGTCGTTCAGATTCAAATCTTCAAGCTAGACTCTTGGAGGATAACAGTCCTAATAATAATCCTTCAGATTCAGCCATTCCAAGTACTACTCAAAGGTTAGAAGGAGGAGGGCATACAGTTGATAATGTAGCTACAGCAGCCGCAGGCGTTCCACATCATCAGGGTGTAGTTGCTTCAGAAGAAGAGATTAAGAAACTTGTGTCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCACTGGCAGCTGCTGATGGTGATCTTAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTAA 1251 0.4253 MRRPRNMRPNIVSEAGVSTRLNQYWESIPFLTSAVVVVCGIIYLVCLLVGYDSFAEICFLPSAVVSRFQVYRIYTSILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYIIILLATSNAIFHVLIALLVAHNPFLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIEASSWLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTTSGILSGNIWRNLSSLMPQREVSAQLQSVEDSRFPGRGRALGSGQGQMASGRSDSNLQARLLEDNSPNNNPSDSAIPSTTQRLEGGGHTVDNVATAAAGVPHHQGVVASEEEIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04959 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 414 IPR015940 -
Seca2g04959 416 SUPERFAMILY UBA-like 369 415 IPR009060 GO:0005515
Seca2g04959 416 Gene3D - 353 416 - -
Seca2g04959 416 Pfam UBA/TS-N domain 377 411 IPR015940 -
Seca2g04959 416 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Seca2g04959 416 CDD UBA_At3g58460_like 377 412 - -
Seca2g04959 416 Gene3D - 22 219 IPR035952 -
Seca2g04959 416 FunFam Rhomboid-like protein 15 22 219 - -
Seca2g04959 416 SMART uba_6 376 413 IPR015940 -
Seca2g04959 416 MobiDBLite consensus disorder prediction 291 354 - -
Seca2g04959 416 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016020
Seca2g04959 416 PANTHER DER1-LIKE PROTEIN, DERLIN 21 309 - -
Seca2g04959 416 MobiDBLite consensus disorder prediction 313 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04959 Seca-Chr2 136199894 136206743 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04959 - - gmx:100798661 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04959 2 136199894 136206743 Seca2g04959 2 136199894 136206743 ECH