Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04937 ATGAGAACGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCCGTTACCCTCTTCCTTTTTCTTTCCCTCATACCACTCCATTCCGCATTCCCTCACAACAACTCTTCTTCTTCTTCTTCCTCTGGTCAGATCAACTCTAACTCAATCCTCGTCGCTCTTCTCGATTCTCATTACACCGAACTTGCAGAGCTCGTTGAGAAAGCGCTTCTCCTTCAGAAACTTGAAGAAGCTGTCGGCAGCCACAACATCACCATCTTCGCCCCGAGAAATCAAGCTCTGGAACGTGACCTAGACCCCGAATTCAAGCGATTCTTACTCGAACCACGCAATCTCAAGTCGCTCCAGACACTCTTGATGGCCCACATTCTCCCCACACGAATCGCCTCTCACCACTTTCCCGCCGCTGAACACCGCCACGCTTCCCTCTCCGACCACCACCTCCATTTGACCACCAATCCCTCCGGCAAGAAAACCGTCGACTCCGCGGAGATCCTCCGTCCAGACGACGTCGTCCGTCCCGACGGAATCATCCACGGGATCGAGCGCCTCATCGTTCCCCGCTCCGTGCAGGAGGATTTCAACCGGAGGAGAAGCCTCCGCGCGATCTCGGCGGTGCTGCCGGAGGGAGCACCGGAGGTAGATCCCCGAACACACCGTTTAAAGAAACCGGCACCGGTCCCAGCCGGTGCCCCACCGGTGCTGCCAATCTACGATGCAATGGCTCCTGGACCTTCCCTCGCTCCGGCGCCGGCACCAGGACCGGGAGGGCCACGTCATCACTTCAACGGGGAGAGACAGGTGAAGGACTTCATCCATACGCTTCTACATTATGGCGGTTACAACGAAATGGCGGATATTCTGGTGAATCTAACATCCCTTGCAACCGAAATGGGAAGGTTAGTTTCTGAGGGTTATGTGCTCACCGTTTTGGCTCCAAACGACGAGGCAATGGCGAAGTTAACGACAGACCAGTTGAGTGAACCGGGAGCACCGGAACAGATCATCTATTATCACATCATTCCAGAGTATCAGACGGAGGAGAGTATGTACAATGCGGTGCGAAGGTTCGGTAAGATCCGGTACGATACCCTGCGGTTACCACATAAGGTGTTGGCGCAGGAATCTGACGGTTCCGTTAAATTCGGTCACGGTGATAGCTCTGCGTATTTGTTCGACCCTGATATTTACACCGACGGAAGGATTTCCGTCCAAGGGATTGACGGCGTTCTTTTCCCTCCTGAGGAAAACGACGACACCACTCAACGCACCCGCACCACAACTCCTCTTGTTAAAGTTGCTGCTAAACCCAGGAGAGGTAATTAA 1326 0.5385 MRTSTMDSSSIYGVSVTLFLFLSLIPLHSAFPHNNSSSSSSSGQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGSHNITIFAPRNQALERDLDPEFKRFLLEPRNLKSLQTLLMAHILPTRIASHHFPAAEHRHASLSDHHLHLTTNPSGKKTVDSAEILRPDDVVRPDGIIHGIERLIVPRSVQEDFNRRRSLRAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKIRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLFPPEENDDTTQRTRTTTPLVKVAAKPRRGN. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04937 441 ProSiteProfiles FAS1/BIgH3 domain profile. 268 411 IPR000782 -
Seca2g04937 441 ProSiteProfiles FAS1/BIgH3 domain profile. 46 185 IPR000782 -
Seca2g04937 441 SUPERFAMILY FAS1 domain 48 188 IPR036378 -
Seca2g04937 441 Gene3D FAS1 domain 50 187 IPR036378 -
Seca2g04937 441 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 11 440 IPR044654 -
Seca2g04937 441 SMART fasc_3 85 188 IPR000782 -
Seca2g04937 441 SMART fasc_3 309 414 IPR000782 -
Seca2g04937 441 Gene3D FAS1 domain 287 414 IPR036378 -
Seca2g04937 441 FunFam Fasciclin-like arabinogalactan protein 16 263 414 - -
Seca2g04937 441 Pfam Fasciclin domain 58 187 IPR000782 -
Seca2g04937 441 Pfam Fasciclin domain 303 412 IPR000782 -
Seca2g04937 441 SUPERFAMILY FAS1 domain 247 415 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04937 Seca-Chr2 135966924 135968249 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04937 - - gmx:100818575 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04937 2 135966924 135968249 Seca2g04937 2 135966924 135968249 ECH