Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04927 ATGACCCGTTTATCCGAGAAGCTCCGTTTGTCTTCCTTATTCCTCAAACCGACCCGCTTTCTCGCTCTTCTTTCTCTCTCCACTCTCCATCTCTGCAAGTCCCTTGCTCGCTTCCTACTCTCTCAAACCCTACCCTTCCTCTCTATGGATAACCTCTTCGCCGATAACTCCGGCTACCTCTCCGACGACTTCGATTCCAACTACTCCCTCCGCCCCCACCGTCGCTTCCTCCAAGAGGATGACCCCGATTTCGGCCTCGAGAGGGTTTACTTGCTTCCCTACAGGTGGTGGATAGAAGCAGACGGTGAGGGTGATCGTGGAGAAGGTGTTCTGTATACGGTGTCGTCTGATTCTGATTCTGACTCCGAAATTTTGCTCCATCTGAGGAAAGAAGAGAACCGCGAGAAGGTTAAAAATTTCGAGGTAGGGTTTTCAGGCCGTCAGTATGCCTTGGTTCCTGAAGGAATCTGGTTGCGCACTCTTAAACGGTATAATGATTTTAATAATGCAGTGAAAGATTTTGGGAGCCTCTTCTATGCAGAGGACTGTTTGCTGGATTTGTTCCCATTGCAAATTAGGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAGAAGGAAAATGTGGCTGACTTCTACAAGAAAGCTTGTGACATTTTCAATTCTGCATATAGCCCAGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTCTTCATGAATGACAAAGCTAGGTTGCCAAATGATTCTCTTGGTCAACCTGGAAAAGAGGTTCTTCTGGAATTACAAGTTCATGGACTTTCAGATTCAATGAGGGGTAATGGGAGCAATGAGATGATTTCAGATCGGTCTCAAATGGAATGTTCTTCTCATAGTTGCTCTGTTACCATGAATGGAAGCACTGGCAATGTGATCCCCTATGTAACAACAACCAACTATTTTCAAGGCAGTAGCTATAAAGCAGTTCAATCTTTGGGCTTGACAGGATTACAAAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCGAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGCATGAATGGAGAACTTGCTCTAGCTTTTGGAGATTTACTTAGAAAGCTGTGGGTTCCTGGAGCAAGACCTGTGGCACCAAGAACGTTTAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTAAAGGATGCAGATGGCCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGTCAAGGTCAGTTCCGGTCGACCTTGGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACAATACGGACCATGACTTTGACTGTCATGAGCACTGATGGGATTACATCACCTTCTACAATTACTGTAACAGTGCCTGAATGTGGAACACTTAAGGATCTTTTTGGGGCCTTAAGTGCTTCTTGTTCTCTGAGAGACGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAGATTTTTCGAGTATTTGAGGAACCATCTGATTCATTAGCCGATATTAGAGATCAAGACAAACTTGTTGCTTACCGAATGCAAAAATATAATGAAGCTAGTCCATTGGTTGTTTTCATGCATGGACAATTGGTGGAAAAGTAA 1860 0.4333 MTRLSEKLRLSSLFLKPTRFLALLSLSTLHLCKSLARFLLSQTLPFLSMDNLFADNSGYLSDDFDSNYSLRPHRRFLQEDDPDFGLERVYLLPYRWWIEADGEGDRGEGVLYTVSSDSDSDSEILLHLRKEENREKVKNFEVGFSGRQYALVPEGIWLRTLKRYNDFNNAVKDFGSLFYAEDCLLDLFPLQIRIFVSWETSSLVAKISQKENVADFYKKACDIFNSAYSPVHIWDFSGQTTQFFMNDKARLPNDSLGQPGKEVLLELQVHGLSDSMRGNGSNEMISDRSQMECSSHSCSVTMNGSTGNVIPYVTTTNYFQGSSYKAVQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGARPVAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVMSTDGITSPSTITVTVPECGTLKDLFGALSASCSLRDDETLLVAEIYKNKIFRVFEEPSDSLADIRDQDKLVAYRMQKYNEASPLVVFMHGQLVEK. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04927 619 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 334 349 IPR018200 GO:0004843|GO:0006511
Seca2g04927 619 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 284 544 - -
Seca2g04927 619 SUPERFAMILY Cysteine proteinases 331 521 IPR038765 -
Seca2g04927 619 Gene3D Cysteine proteinases 319 559 - -
Seca2g04927 619 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 333 619 IPR028889 -
Seca2g04927 619 Pfam Ubiquitin carboxyl-terminal hydrolase 333 502 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04927 Seca-Chr2 135896508 135904251 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04927 - K21343 gmx:100791802 993.03