Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04880 ATGGACCAGTTGCCTGCATGCTACAGGTTACAAGGAAAGGTAGCACTCATAACTGGTGGTGCAAGTGGCATCGGCGAAGCCACCGCAAAGCTTTTCCTTCGCCACGGTGCCAACGTCATCATCGCCGACATCCAAGACGATCTGGGACGTTCCCTCTGTCACGGAAACCCAAACGTTTCCTATGTTCACTGTGACGTCACTAACGATTCTGACGTTCAAACTGCCGTTAGTGCTGCCGTCTCGCGGTACGGAAAGCTTGACATCTTGTTCAGCAACGCCGGCATCATTGGCAATGCTGCGAACACTTCCATCCTGACCGTTGATCATGCGGACTTGAAGCGGGTTTTGGATGTCAACGTTTGTGGTGCTTTCTTGACGGCCAAACACGCCGCTAAGGTGATGGTTCCTGAAAAGAAAGGGAGTATTATATTCACGGCTAGCATGGCTTCCGTGACTCATGATGCTTCTTCGCCGCATGCTTACGTGGCGTCTAAACACGCGGTGGTGGGTTTGATGAAGAATTTGGGGGTGGAATTGGGGAAGCATGGGATCAGAGTTAATTGTATTTCACCGTATGCAGTGGCGACACCTATGCTGAGAGGTGTGACGGGGATGGAGAAGGAGAGAATAGAAAAAGTGTTTTCAGAAGCGGCGAATTTGAAGGGAGTGGTTCTGAGGGATGAGGATGTGGCGGAAGCAGCTCTGTTTCTGGCGAGCGATGAGTCCAAGTATGTGAGTGGGTTGAACTTAGTTGTGGATGGAGGTTACAGTACCACCAATGTTTCTGTCAGTGTCAATCAAGCTTTTAACAAGTTTTCTGCAGATGAGACCATACTGTGA 840 0.5 MDQLPACYRLQGKVALITGGASGIGEATAKLFLRHGANVIIADIQDDLGRSLCHGNPNVSYVHCDVTNDSDVQTAVSAAVSRYGKLDILFSNAGIIGNAANTSILTVDHADLKRVLDVNVCGAFLTAKHAAKVMVPEKKGSIIFTASMASVTHDASSPHAYVASKHAVVGLMKNLGVELGKHGIRVNCISPYAVATPMLRGVTGMEKERIEKVFSEAANLKGVVLRDEDVAEAALFLASDESKYVSGLNLVVDGGYSTTNVSVSVNQAFNKFSADETIL. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04880 279 Gene3D - 6 271 - -
Seca2g04880 279 FunFam Short-chain dehydrogenase reductase 1 263 - -
Seca2g04880 279 Pfam Enoyl-(Acyl carrier protein) reductase 19 257 - -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Seca2g04880 279 PRINTS Glucose/ribitol dehydrogenase family signature 161 180 IPR002347 -
Seca2g04880 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 258 IPR036291 -
Seca2g04880 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Seca2g04880 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Seca2g04880 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 IPR002347 -
Seca2g04880 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04880 Seca-Chr2 135229755 135230594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04880 5 263 Acyl Lipid Metabolism Gene Families AT3G55290 32.463 1.79e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04880 - - gmx:102668408 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04880 2 135229755 135230594 Seca2g04880 2 135229755 135230594 ECH