Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04877 ATGTCGCTTGGCGAATATCCCAATAAAACTAATCTCCATCACAGCTTTGCATCTTACAGACTGTTCCTCCTCTCCTTTTGCCATACATCAATGTCAAGTTCAACCTCAACCTCAACCTCAGCAGCCAACAGAAGGCTGGAAGGAAAAGTGGCACTGATAACTGGAGGAGCAAGTGGCATAGGAAAACGCACTGCAGAAGTATTCGCCGAGCATGGAGCCAAAGTAGTGATCGCAGACATCCAAGATGAATTGGGCCGTTCTGTTGCTGAGTCCATTGGGCCTTCAATATGTATGTACATCCATTGCGATGTCACTGATGAGAACCAAATCAAAAACGCCGTGGAAACTGCCGTACAAACATACGGGAAACTGGACATCATGTTCAACAACGCAGGCATAGGTGGTCCCAACAATTCCCGAATCATTGACAATGATAAGGCAGATTTCGAGCGCGTGCTAAGCATCAATGTGACAGGTGTCTTCCTCGGCATCAAACACGCAGCACAGGCCATGATCCCAGCTCGTAGTGGTAGCATTATCAATACTGCTAGCATAAGCTCTTATGTTGGTGGTGCTGCCTCACATGCCTATTGTTGTGCTAAGCATGCCGTTGTTGGCTTAACTAAAAATGCAGCGGTTGAGCTTGGACAATTTGGGATAAGGGTGAATTGCTTGTCGCCTTACGCTTGTGCTACTCCTTTGGCTACTCAGTTCGTTGGAGTTAGTGATGAGGTGCTTGAAAATACAATGAGCTCATTGGCTAATCTCAAGGGTGTGACTTTTAAAACTGATGATGTGGCGAATGCAGCACTTTATTTTGCTAGTGATGATTCTAGGTATGTGAGTGGGCATAACTTACTCATAGATGGGGGCTTTAGCATTGTTAATCCATCTTTTCAAATACTGGAAGGAAAAGTGGCACTGATAACCGGAGGAGCAAGTGGCATTGGTAAGCGCACTGCAGAAGTATTCGCTCAACATGGGGCCAAAGTAGTGATTACAGATATCCAAGATGAATTGGGCCATTCTGTTTCTCAATCCATTGGGCCTTCAACATGTATGTACATCCATTGCGATGTCACTGATGAGAACAGAGTCAAACACGCCGTAGAAACTGCCGTACAAACATATGGGAAACTAGACATCATGTTCAACAATGCAGGCATAGGTGGTCCCAACGAGTCCCGAATCATTGATAATGATAAGGCAGATTTCGAGCGCATGTTAAGCGTCAATGTAACAGGTGTTTTCCTCGGCATCAAGCACGCAGCACAAGCCATGATGCCAGCACGTAATGGTAGCATTATCAATACTGCTAGCGTAAGCTCTGCCATTGCTGGCGCTGGCTCACATGCCTATTGTAGTGCCAAGCATGCTGTGGTTGGCCTAACGAAAAGTGCAGCAGTTGAGCTTGGACAATTTGGGATAAGGGTGAATTGTTTGTCACCTTATGGTTGTGCTACTCCCTTGTCTACCAAGTTCCTTGGAATTAATGAGGAGGAATATGAAAATATCATAAATTCGCTGGCTAATCTCAAAGGTGTCACCCTTAAAGCTGATGACGTGGCAAATGCGGCACTTTATTTTGCTAGTGATGACTCAAGGTATGTGAGTGGCCATAATTTGCTCATAGATGGGGGGTTTAGTATTGTTAATCCCTCGTTTCGGATGTTTCAGTACGAGTCGACGCTTGAAGGCAAAGTGGCAATAATCACAGGAGGTGCTAGCGGCATTGGTGCAGCAACTGCTAAACTATTTGTTGAACATGGTGCTAAAGTAATTATAGCAGATGTCCAAGATGAGTTGGGCCTGTCCATTTGCAAGAGCCTTGGCCCAAATGCCACCATTCTCTACGTTCACTGCGATGTAACCTCTGAATCAGATGTCAAACACGTGGTTGATACGGCAGTGTCCAAATTCGGTAAGCTTGACATAATGTACAGCAACGCTGGCATCTCCGGCAATTTGAATCGATCAATTCTGGCTTCTGATAATGAAGATTTCAAAAGGGTTTTTGATATTAACGTTTATGGAGCTTTCTTGGGAGCCAAGCATGCTGCTAGAGTCATGATCCCAGCAAAGAAAGGGGTTATTCTGTTTACTTCAAGTGTTGCTTCGATACTTGGTGGTGAGGCAACACATGCTTACACTGTGTCAAAGCATGCAGTGGTTGGGCTTATGAAGAATTTGTGCATAGAGCTTGGGCAGTTTGGGATTAGAGTCAATTGCATTGCTCCTGGAGCCATTCCCACTCCAATGTTAAATAATGCATTGAAGATGAACAAGAATGAGATACAAAAAGTGTTATGCTCTGTTGCAGTGTTAAAAGAGGCAGTTCTTGAGGCAGAGGACATAGCAGAGGCAGCACTTTATTTGAGCAGTGAGGAGTCCAAGTTTGTGAGTGGAGTCAACTTTGTATTGGATGGTGGATATAGCACCACCAATATGTCTTTCACTTCAGCACTCAAAGCTCTCATGATCAACGGCCACAGCCACAACAACATTCAGTGA 2511 0.448 MSLGEYPNKTNLHHSFASYRLFLLSFCHTSMSSSTSTSTSAANRRLEGKVALITGGASGIGKRTAEVFAEHGAKVVIADIQDELGRSVAESIGPSICMYIHCDVTDENQIKNAVETAVQTYGKLDIMFNNAGIGGPNNSRIIDNDKADFERVLSINVTGVFLGIKHAAQAMIPARSGSIINTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYACATPLATQFVGVSDEVLENTMSSLANLKGVTFKTDDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFQILEGKVALITGGASGIGKRTAEVFAQHGAKVVITDIQDELGHSVSQSIGPSTCMYIHCDVTDENRVKHAVETAVQTYGKLDIMFNNAGIGGPNESRIIDNDKADFERMLSVNVTGVFLGIKHAAQAMMPARNGSIINTASVSSAIAGAGSHAYCSAKHAVVGLTKSAAVELGQFGIRVNCLSPYGCATPLSTKFLGINEEEYENIINSLANLKGVTLKADDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFRMFQYESTLEGKVAIITGGASGIGAATAKLFVEHGAKVIIADVQDELGLSICKSLGPNATILYVHCDVTSESDVKHVVDTAVSKFGKLDIMYSNAGISGNLNRSILASDNEDFKRVFDINVYGAFLGAKHAARVMIPAKKGVILFTSSVASILGGEATHAYTVSKHAVVGLMKNLCIELGQFGIRVNCIAPGAIPTPMLNNALKMNKNEIQKVLCSVAVLKEAVLEAEDIAEAALYLSSEESKFVSGVNFVLDGGYSTTNMSFTSALKALMINGHSHNNIQ. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04877 836 CDD secoisolariciresinol-DH_like_SDR_c 45 293 IPR045309 GO:0016616
Seca2g04877 836 Gene3D - 34 298 - -
Seca2g04877 836 Gene3D - 299 557 - -
Seca2g04877 836 Gene3D - 558 827 - -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 737 754 IPR002347 -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 775 795 IPR002347 -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 641 652 IPR002347 -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 690 706 IPR002347 -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 716 735 IPR002347 -
Seca2g04877 836 PRINTS Glucose/ribitol dehydrogenase family signature 568 585 IPR002347 -
Seca2g04877 836 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 303 551 IPR036291 -
Seca2g04877 836 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 378 389 IPR002347 -
Seca2g04877 836 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 453 472 IPR002347 -
Seca2g04877 836 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 433 441 IPR002347 -
Seca2g04877 836 CDD secoisolariciresinol-DH_like_SDR_c 302 549 IPR045309 GO:0016616
Seca2g04877 836 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Seca2g04877 836 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 40 296 - -
Seca2g04877 836 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 440 468 IPR020904 GO:0016491
Seca2g04877 836 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 565 813 IPR036291 -
Seca2g04877 836 FunFam Short-chain dehydrogenase reductase 298 552 - -
Seca2g04877 836 FunFam Short-chain dehydrogenase reductase 33 297 - -
Seca2g04877 836 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 295 IPR036291 -
Seca2g04877 836 FunFam Short-chain dehydrogenase reductase 557 817 - -
Seca2g04877 836 Pfam Enoyl-(Acyl carrier protein) reductase 311 549 - -
Seca2g04877 836 Pfam Enoyl-(Acyl carrier protein) reductase 573 812 - -
Seca2g04877 836 Pfam Enoyl-(Acyl carrier protein) reductase 55 293 - -
Seca2g04877 836 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 703 731 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04877 Seca-Chr2 135178703 135195418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04877 564 813 Miscellaneous Gene Families AT4G05530 29.528 1.55e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04877 - - cqi:110732338 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04877 2 135178703 135195418 Seca2g04877 2 135178703 135195418 ECH