Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04849 ATGCAGATGGATTCCATTGAAGCAAACTTCACCATGCAATGCCAGCAAGAGAGACAACAAGGTGTCCACACCTATGTTGCTCAGTGGCCAATTTTCGCACTAGCATGGTCAATTCGCCGTGACAAAGCCCCACGTCTTGCAATTGGTAGTTACTTGGAAGATTACAACAACAAGGTTGAACTTGTCCACTTCAACTATGACACATTCAATTTCACCACAGACCCTCGTTTGGTTCTTGACCATCCTTATGCACCAACAAACATAATGTTCTTTCCCTCTGAGGATGACACGAATCCTGATCTCATTGCAACTTCAGGTGACAGCTTAAGGTTATGGGAAATCCAAGATGACCAAATTCAGCTAAAGTCTTCCCTAATTGGTAACAAAGTCAGTGATCATTCAGCCATAACATCCTTTGATTGGGCTGTGTTTGATACCCATCTTGTGGCTACTTCTAGTGTAGACACCACATGCACAATTTGGGACATAGAAAGGGAAGTTATGAATGCACAATTAGTGGCACATGACAAAGAAGTGTATGACATTTCATGGGGTGGATTTAATGTCTTTGCTTCTGTGTCTGGTGATGGTTCTGTCAGGATTTTTGATTTAAGGGACAAAGAGAAATCAACTATAATTTATGAAAATCCAGTTCAGGATTGTCCTTTGCTGCGTTTGGAATGGAATAAAAGTGACCCAAGGTTCATGGCCACGGTGGGATTGAACAGTAATAAGGTGGTAATACTTGATATTAGGCTACCAACAACACCTTTGATGGAGTTAAGTAAGCATAGGACATGTGTTAATGCTATTTCATGGTCCCCTGATTTTGGGAGGCATTTGTGTTCTGTGAGTGATGATGCAAGGGCTTTGATTTGGGAAGTGAGGGACATGGGATTCCCATCAGTGAGTGGTGGTGGTGGTGGTGATGTGGAGCCCATGTTATGGTATGGTAATGGATCATCAGCTGAAATAAATCATGTGCGTTGGTCACCTGTTCAGATGGACTGGATTGCCCTTGTTTTCTTGAATAACTTGCAGCTACTCAAGGTGTGA 1056 0.4252 MQMDSIEANFTMQCQQERQQGVHTYVAQWPIFALAWSIRRDKAPRLAIGSYLEDYNNKVELVHFNYDTFNFTTDPRLVLDHPYAPTNIMFFPSEDDTNPDLIATSGDSLRLWEIQDDQIQLKSSLIGNKVSDHSAITSFDWAVFDTHLVATSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSGDGSVRIFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLNSNKVVILDIRLPTTPLMELSKHRTCVNAISWSPDFGRHLCSVSDDARALIWEVRDMGFPSVSGGGGGDVEPMLWYGNGSSAEINHVRWSPVQMDWIALVFLNNLQLLKV. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04849 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 212 IPR001680 GO:0005515
Seca2g04849 351 SMART WD40_4 118 162 IPR001680 GO:0005515
Seca2g04849 351 SMART WD40_4 72 113 IPR001680 GO:0005515
Seca2g04849 351 SMART WD40_4 209 250 IPR001680 GO:0005515
Seca2g04849 351 SMART WD40_4 254 294 IPR001680 GO:0005515
Seca2g04849 351 SMART WD40_4 165 203 IPR001680 GO:0005515
Seca2g04849 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 296 - -
Seca2g04849 351 PANTHER WD REPEAT CONTAINING PROTEIN 13 351 IPR045159 -
Seca2g04849 351 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Seca2g04849 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 296 IPR001680 GO:0005515
Seca2g04849 351 SUPERFAMILY WD40 repeat-like 28 339 IPR036322 GO:0005515
Seca2g04849 351 Pfam WD domain, G-beta repeat 131 162 IPR001680 GO:0005515
Seca2g04849 351 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515
Seca2g04849 351 Gene3D - 13 348 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04849 Seca-Chr2 134986343 134988068 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04849 K11805 - zju:107416321 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04849 2 134986343 134988068 Seca2g04849 2 134986343 134988068 ECH