Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04832 ATGGAAGCCGTACTATCATCCCGCTACTTCTCGAGTCCTTTGTGTTGCGACAAAAGAAGTACCTCTCTGTGCTCTTCTTCTTCCAAATTAATCAAGCTCTACTCTCCTCCTGCTCCTGCCACTGGGATCGCCGCTTCCTTCTGTTACAGGAATTCCTTCACGAAAGAGATATGGGGTTGGGTGCAGTCAAAGAGCGTCGCTGTTACAAGAAGAGACATGCGCAAAGGACTGGTGAGGGCTGAAATGTTCGGCCAGTTAACCACTGGCCTTGAGTCTGCCTGGAACAAGCTCAAAGGAGAAGAGGTTTTGTCCAAAGAGAATATTGTCGAGCCTATGCGAGATATTAGAAGAGCTCTTTTAGAAGCTGATGTTAGTCTTCCTGTTGTTAGAAGGTTTGTGCAATCTGTCAGTGATCAGGCTGTAGGTGTTGGAGTGATTCGAGGAGTGAGACCAGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTGAAATTGATGGGTGAAGAGGTCTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACTGTTTGTGCGAAGTTGGCAAATTATCTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGTAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCTAAACAAGGTTTAGCAGAGGCCAAAAAGAAGAACATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAACAATGATGGATGAGTTAAAAGAAGTGAAGCAGGCATTGAATCCAACGGAAGTCTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCAGCGGCCTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAACTAGATGGTGATTCAAGAGGTGGAGCGGCTTTGAGCGTAAAAGAGGTATCTGGAAAACCAATCAAGCTGGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGATCGAATGGCAGGGAGAATACTAGGAATGGGAGATGTTCTTTCATTTGTAGAGAAGGCACAAGAAGTTATGCGTCAAGAAGATGCTGAAGACCTACAAAAGAAGATCATGAGTGCAAAGTTCGACTTTAATGATTTTCTAAAGCAGACTCGTACTGTTGCACAAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAGATTCGAGAAGCAGAGAAGAATTTGAAGAATATGGAAGTAATGATAGAAGCAATGACCCCAGAGGAGCGGGAAAAACCAGAACTACTGGCTGAATCCCCTGTCAGGAGGAGAAGAGTTGCTCAGGATTCAGGGAAAACAGAACAGCAGGTAAGCCAACTCGTAGCTCAACTATTCCAAATGCGAGTTCGTATGAAGAACCTGATGGGTGTAATGCAAAATGGATCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAACCAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAAGAAGAGATCGGAATCAAGGAGACTATTTGCTGACTCGACATCAGCAAGGCCAGCTCCTCGTGGCTTTGGGAGCAAAAATTGA 1710 0.452 MEAVLSSRYFSSPLCCDKRSTSLCSSSSKLIKLYSPPAPATGIAASFCYRNSFTKEIWGWVQSKSVAVTRRDMRKGLVRAEMFGQLTTGLESAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVKLMGEEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLSILGKQVDVPVYTAGTDVKPSEIAKQGLAEAKKKNIDVVIVDTAGRLQIDKTMMDELKEVKQALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAEKNLKNMEVMIEAMTPEEREKPELLAESPVRRRRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMQNGSMPTLSNLEEALKPEEKAPPGTARRKKRSESRRLFADSTSARPAPRGFGSKN. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04832 569 SMART SRP54_N_2 82 167 IPR013822 GO:0005525|GO:0006614
Seca2g04832 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 434 IPR027417 -
Seca2g04832 569 CDD SRP_G 182 374 - -
Seca2g04832 569 Gene3D - 171 365 IPR027417 -
Seca2g04832 569 MobiDBLite consensus disorder prediction 464 486 - -
Seca2g04832 569 SUPERFAMILY Signal peptide-binding domain 407 508 IPR036891 GO:0006614|GO:0008312|GO:0048500
Seca2g04832 569 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 82 516 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Seca2g04832 569 MobiDBLite consensus disorder prediction 464 491 - -
Seca2g04832 569 FunFam Signal recognition particle 54 kDa subunit 171 365 - -
Seca2g04832 569 MobiDBLite consensus disorder prediction 523 569 - -
Seca2g04832 569 Pfam Signal peptide binding domain 407 505 IPR004125 GO:0006614|GO:0008312|GO:0048500
Seca2g04832 569 Hamap Signal recognition particle 54 kDa protein [srp54]. 86 523 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Seca2g04832 569 Gene3D - 387 511 IPR036891 GO:0006614|GO:0008312|GO:0048500
Seca2g04832 569 SMART AAA_5 180 327 IPR003593 GO:0016887
Seca2g04832 569 SMART SRP54_3 181 376 IPR000897 GO:0005525|GO:0006614
Seca2g04832 569 Gene3D - 85 386 IPR042101 -
Seca2g04832 569 Pfam SRP54-type protein, helical bundle domain 86 163 IPR013822 GO:0005525|GO:0006614
Seca2g04832 569 Pfam SRP54-type protein, GTPase domain 181 376 IPR000897 GO:0005525|GO:0006614
Seca2g04832 569 MobiDBLite consensus disorder prediction 527 552 - -
Seca2g04832 569 NCBIfam signal recognition particle protein 84 508 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Seca2g04832 569 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 349 362 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04832 Seca-Chr2 134797008 134803289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04832 K03106 - gmx:100782581 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04832 2 134797008 134803289 Seca2g04832 2 134797008 134803289 ECH