Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04820 ATGAAGAAGAGGTTGCTGAAACCAATCGCAAAACCACCGGTTTCTCCAATACTCAACCCTCCTTGTCCTCCACCTGATGCATCTCTTTCCCCTCTTTCTCCTCCTCCTCCTCCCACTCTCACCCTCACTCCAACCCCTCACTACGATCGCTTCCTTCACTTCCTCAACACCCATCTCTCCCCTCCTTTAACCCCCGACACACTGATCCACTTCCTCAAATCGAAGCTCCACCACCACCCTTCCTTCACTCACTACGACTTCCACATCTTCACCTGGGCTTCTTCCCTCGACACCTTTCGCCACAACCACACCTCCTTCGAATGGATGGCTCGCACCCTCGCTCTCACCCACCGCTTCCCCCACCTCCGCACCCTCCTCAATTTCATCGCTTCTAACCCTTGCCCTTGCTCCTCCGATGGCATTTTCTCTTGCCCCAAAAATGAACCTATTTTCCGTTTCGCCATTCACGCTTACTGTAAAGCTTCCAAATTGGACGATGCCCTCTTTGCCTTTCGCTGCATGCTTAGGTTGATCGATGGCAGGCCTCATGTCTCCGTTTGCAATATTCTGATTCATGGGTTTGTCAAATGTGGTATGCATGATAGGGCTCTTGAATTTTATCATGAGATGGTTAGGGATATTAGGGTCAAGCCTGATGTTTTTACTTTTAATATTTTGATTAGCAGTTATTGTAAGAATTCACAATTTGGGTTGGCTTTGGAGTTGTTTAAGGAGATGAGGAAAATGGGGTGTCATCCAAATGTGGTTACTTTTAATACCTTGATTAAGGGCTTGTTTAGGGAGGGTAGGGTTGAAGAAGGGATTGGGATGGCTCATGAGATGATTGAATTGGGGTGTCAACTTTCCAGTGTTACTTGTGAGATTTTGGTTCATGGACTTTGTAAGGAAGGGAAGGTTTTGCAGGTGTGTGACCTATTGGTGGGTTTTAACAAGAGGGGGGTTTTGCCAAAAGGGTATGATTATTTTGATTTGGTGGAAGTTTTGTGCAGGGAAGGAAATGCTATTCGAGCCTTGGAGCTTATTTATGAGTTATGGGACAAAGGAAGTGTGCCAAGCTTGATTGCTTGTACTGTGATGATTGATGGTTTGAGAAGATTGGGGAAGACTGAAGAAGCTTGGAGATTGGTGGAAAAAATGCTTAAAGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTCCTTCAAGATATTTGCAATGAGCGAAGAACAGAAGAAGCAGATAAATTGAGATTACTAGCTTCAAGCAAGGGTTCGGAACCAGATGGAATGACATATAAAATTTTGGTTACTGGATATATGGGAGAGGGAAGTCGAAAAGAAGGAGAGTTAGTGGTAAATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAATTGATGGAGGGACTATCTAAATGTCAACGCTCTGCATGCCATCAAGTCAACAAATTTGGCAGCTGA 1476 0.4465 MKKRLLKPIAKPPVSPILNPPCPPPDASLSPLSPPPPPTLTLTPTPHYDRFLHFLNTHLSPPLTPDTLIHFLKSKLHHHPSFTHYDFHIFTWASSLDTFRHNHTSFEWMARTLALTHRFPHLRTLLNFIASNPCPCSSDGIFSCPKNEPIFRFAIHAYCKASKLDDALFAFRCMLRLIDGRPHVSVCNILIHGFVKCGMHDRALEFYHEMVRDIRVKPDVFTFNILISSYCKNSQFGLALELFKEMRKMGCHPNVVTFNTLIKGLFREGRVEEGIGMAHEMIELGCQLSSVTCEILVHGLCKEGKVLQVCDLLVGFNKRGVLPKGYDYFDLVEVLCREGNAIRALELIYELWDKGSVPSLIACTVMIDGLRRLGKTEEAWRLVEKMLKEGMVLDVVTFNCVLQDICNERRTEEADKLRLLASSKGSEPDGMTYKILVTGYMGEGSRKEGELVVNEMLDRGFIPDLASYNKLMEGLSKCQRSACHQVNKFGS. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Seca2g04820 491 Pfam PPR repeat 155 176 IPR002885 -
Seca2g04820 491 Pfam PPR repeat 186 212 IPR002885 -
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Seca2g04820 491 PANTHER OS03G0856100 PROTEIN 216 480 - -
Seca2g04820 491 Pfam Pentatricopeptide repeat domain 423 473 IPR002885 -
Seca2g04820 491 Gene3D Tetratricopeptide repeat domain 419 489 IPR011990 GO:0005515
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Seca2g04820 491 Gene3D Tetratricopeptide repeat domain 214 307 IPR011990 GO:0005515
Seca2g04820 491 Gene3D Tetratricopeptide repeat domain 88 213 IPR011990 GO:0005515
Seca2g04820 491 Gene3D Tetratricopeptide repeat domain 308 418 IPR011990 GO:0005515
Seca2g04820 491 Pfam PPR repeat family 358 407 IPR002885 -
Seca2g04820 491 Pfam PPR repeat family 218 266 IPR002885 -
Seca2g04820 491 NCBIfam pentatricopeptide repeat 256 289 IPR002885 -
Seca2g04820 491 NCBIfam pentatricopeptide repeat 221 255 IPR002885 -
Seca2g04820 491 NCBIfam pentatricopeptide repeat 432 464 IPR002885 -
Seca2g04820 491 NCBIfam pentatricopeptide repeat 186 220 IPR002885 -
Seca2g04820 491 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Seca2g04820 491 MobiDBLite consensus disorder prediction 13 40 - -
Seca2g04820 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Seca2g04820 491 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04820 Seca-Chr2 134693705 134696194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04820 150 481 Miscellaneous Gene Families AT4G11690 30.539 9.98e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04820 - - aprc:113860936 729.169