Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04783 ATGAAAGATGAGGATAAGTACAATCTTGATGAAGCAGCTAGCAGTTACAAAGAGGTTGAGGATGAGCAAGGCTCTGTCACATCATCACTTGTAGATGTTAACACCAATGCTCAAGCCAAGAAGTCATCAGTTCGTTTAGACAAGAAAGTAAAAATAGAAAGTGAAGAAGTTAAACCTAGGATCATTCCTCCACCTGGCATTGGGCAGAAAATATATGAGATTGATTCATTTTTGCAAGCTCACCGCCAACATCTTGACTTCCGTTATGGACAATACAAAAGGATGCGTGAGGAAATTGACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCATACGCAGTTCTACAGGCATTACTTACCGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAGTTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCCGGAATGAGTTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATTCACATGGATACTCCCTCCGGGATCAAGGACTCAATTCCTGCTTGGATCAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATGATGGGATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCTCAGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACATATTGGAATGAGTAGTCCGGAGCCAAAAATTAACACATACGTGAATTTTAGAGATGATGTACTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTTCAGATTATGGCTATCCAAGAACATTCTTATTATGCTAGCTTTGGGTACCATGTTACTAATTTCTTTGCACCCAGCAGTCGGTTTGGAACTCCAGAAGAACTTAAGTCTCTGATAGACACAGCCCATGAACTAGGTTTGCTTGTTCTGATGGATATTGTACACAGCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATAGTCACTACTTCCATCCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTCCTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTTGATGAATACAAGTTTGATGGGTTTCGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGATTGGAGGTATCTTTTACTGGAAATTACAGCGAGTATTTTGGCTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTTAATGATGTCATTCATGGGCTCTTCCCCGAGGCTGTTACAATTGGTGAAGATGTCAGTGGAATGCCTACATTCTGCCTTCCTACACAGGATGGTGGGGTTGGCTTTGATTATCGCCTGCAGATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGAAAGATGAAGACTGGAGAATGGGTGATATAATCCACACACTCACAAACAGAAGGTGGCTGGAAAAATGTGTGGCTTATGCTGAAAGTCACGATCAAGCCTTGGTTGGTGACAAGACACTTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCTACCCCTCTTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACTATGGGCCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTGATGGTAGAGTAATTCCTGGAAATAACAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAGACTATCTAAGATATCGGGGGATGCAAGAATTTGATCAAGCTATGCAACATCTAGAAGAAAGATTTGGTTTCATGACTTCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAGTTTTCGAAAAAGGCAACCTCGTCTTCGTCTTCAATTTTCATTGGAGCAATAGCTATTCAGATTACAGAGTTGGCTGTTCAGCTCCGGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAGTAGGCTCAATCACACCGCTGAGTACTTCACCTCTGTATGGGACTTCTCTAAACTTGTCCTTGTGTGCACATGCTCAGGCATGAACACACAAGCATGCCGTTGTGTCTTGTTTGTGTTTTTTAAATTCTTGGGGACATGA 2271 0.4174 MKDEDKYNLDEAASSYKEVEDEQGSVTSSLVDVNTNAQAKKSSVRLDKKVKIESEEVKPRIIPPPGIGQKIYEIDSFLQAHRQHLDFRYGQYKRMREEIDKYEGGLDAFSRGYEKFGFIRSSTGITYREWAPGAKSAALVGDFNNWNPNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYDGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHIGMSSPEPKINTYVNFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDTAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDSHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLEVSFTGNYSEYFGFATDVDAVVYLMLVNDVIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILKKKDEDWRMGDIIHTLTNRRWLEKCVAYAESHDQALVGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPDGRVIPGNNNSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEERFGFMTSEHQYISRKNEGDKVIVFEKGNLVFVFNFHWSNSYSDYRVGCSAPGKYKIVLDSDDALFGGFSRLNHTAEYFTSVWDFSKLVLVCTCSGMNTQACRCVLFVFFKFLGT. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04783 756 SUPERFAMILY E set domains 109 218 IPR014756 -
Seca2g04783 756 CDD E_set_GBE_euk_N 122 216 - -
Seca2g04783 756 CDD AmyAc_bac_euk_BE 220 635 - -
Seca2g04783 756 SUPERFAMILY (Trans)glycosidases 227 642 IPR017853 -
Seca2g04783 756 Gene3D Glycosidases 75 644 - -
Seca2g04783 756 PIRSF GlgB 7 745 IPR037439 GO:0003844|GO:0005978
Seca2g04783 756 SMART aamy 254 614 IPR006047 GO:0005975
Seca2g04783 756 Gene3D Immunoglobulins 111 223 IPR013783 -
Seca2g04783 756 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 115 198 IPR004193 GO:0004553|GO:0005975
Seca2g04783 756 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 649 750 - -
Seca2g04783 756 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 44 726 - -
Seca2g04783 756 Pfam Alpha amylase, catalytic domain 264 336 IPR006047 GO:0005975
Seca2g04783 756 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g04783 756 Gene3D - 649 738 IPR013780 -
Seca2g04783 756 SUPERFAMILY Glycosyl hydrolase domain 649 722 - -
Seca2g04783 756 MobiDBLite consensus disorder prediction 1 28 - -
Seca2g04783 756 FunFam 1,4-alpha-glucan branching enzyme 218 644 - -
Seca2g04783 756 Pfam Alpha amylase, C-terminal all-beta domain 653 724 IPR006048 GO:0003824|GO:0005975|GO:0043169
Seca2g04783 756 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 111 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04783 Seca-Chr2 134212579 134235300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04783 28 747 Glycoside Hydrolase AT5G03650 81.302 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04783 K00700 - gmx:100785968 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04783 2 134212579 134235300 Seca2g04783 2 134212579 134235300 ECH