Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04737 ATGGACGCTCCACGTAAACACCAGGTATTGTTGAGAGGAGCAAGTGCGAAGGAGATAACGAGAGATGACCTTCTTCAGAAGGTCTCACGGGAAAGAGAGCTTCGCAATTATGCAAAACGAGCTGTTGCTGCAGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGCTACAAAGGTGGTTGCTCTGCAGCTTCAGGAAGAGTGGGAAACAATGGTGAATCATTATAGTGGAGCGATGACAGCAATTTGGATTTCAAACAATTTGTTGAGACCATTTCTGTTCTTTATGACCTGTTTCTCAACTCGTCATCAGAAGGTCCATAAAAAGAAAATAGACTCAATGAAGATGTGCTTTACTATCCTATTGGAAAGCCTGAAATCTTCTGATTTAAAGCGGAACTTTTGCTTTCTGGCAGTTGGTACAAGTGAAGAGAGAAGAATATGGAGTTACCAGGCAAGGCGGCTGACTTCTCTTGGTTTTTTGATTCTTCAAGAGTTTAGTGAATGCAATTCAGGGGCTCAAGATATTACTATTGTTACATCCCTAGCAATGCGTGTTCTTGTTATGTTAACTGATCTTAAAGGATGGAAAGGCATTACAGATGACAACCGCTTAGATGCAGATTTAGCAGTGAAAGATTTAGTTCAGTTCATGGGGAGTAATAAAAGTGGTAGTTATGTTTCTATTGCCAGATATATTAGTGCATTGGATAATTATTCTTCTCAGACAAAAATTACCACCCAGGCAGATGAATTTTTTTTTATTACTGCAAGTACAATAACTTTAGCTGTGCGGCCATTTCATCTGACAAGCTTTGATGTAGAAGGGCCTGGTATGCTGGACGTTAACCATGCTGCTAAACAATATGTTGTATATCTACTGACTATCCCTTGGCTTGTGCAACATCTCCCACCTGTTTTTCTACCTGCTTTAAAGCACAAATCTATTTTGTTCCCATGCTTCCAGACCCTATTGATTTTGAAAGAGAATGTTTTAATGGAGATGTCAGAATTGGTCAAGTCAAAGATTCTTACCTCTTTCAAGGCAATTCCACCAGTTGGTTGGGCTCTCGCTAACATTATTTGCCTAGCAACAGAGAATGGGAATGGTTCTGTTTCTGTAGACTCTGGATCTTTCAATCACGGTTTAGACTATGCATTGTATGTGCAGGTTGTTATCACTCTAGCAGAAAGCCTAATTACTTGTCTTGATAATATTGGATGGGTCAGAAAGAAGAAGAAAGCCCTTCAAACTGATGTTGAAAGTTCAACACAGCCTGTTGATATGGTTCTGCATGAGGGTGAAGGAACCTATGAGTCGTTAATGATGTCATACACAGATCAGTTTAGACCTGTTTGTCAGCAGTGGCATCTCACAAATCTTTTGGCATCAATAAATAGAGATGCCACCAACAAGGCTGAGACTTTGCTTTCAAATAGTATGGAATGTTTGGGGAAGCTAGATTTGTGTGATGTTGCACTTTTTTATTCTAACTTACTTAGAATATTTTCAGCCTTGAGTCCGATTCGTTGCTCATTACCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGTGTGCACTGGAGGATTCCTTTTTCTCTGGAGACAGACATATTTCTGATAATCACACAAGTGAAAATGGAAGGCAAAAAGCTTTTGAGAAGATGCAAAAACAAGGGAGTAAAGATGGGGCTAATAAGTGGGCCAGTGTACTTCATAAATTTACAGGTAAGTCACAAACTACAACAGATTGTACAAATCCCAGTGGCAGTCACTCTGAGCCTAGCAGAGTGAATGAGGATTCGTCAGATGTATGGGACATAGAACCTATGAGGCATGGCCCACAAGGCATTCCAAAGGATATGTTTGCTATGCTTCATCTTTTCTGTGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCGTTCAAAATAGAGCAGCAACGAAGAATTGCATCAATGCTCAATACCCTAGTGTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCCCTCATGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACCCATTTTGTCCTCCTGATTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCAGTTGCTGCCAGAACTCACGAAATTTTATCAGCCAACCCGAAATGTGATGATTCATCAGCTTCCCTGAGTGAAGGTTCTGTTATCACCGTGACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCTTCCCGAAAAATGGCCGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTAGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTCAATGAAAGTGAGCTTATGGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTTTAACTGACATATCTAAAGCAGCATTCGCCCCTGAATATGGACTTTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCCACTGCATCTGCAAGATATTTGGACAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTTGGTAAAGTTCTTTATGAAGGAATATTACTTGATTACTCCTTCTCTCATGTTTTTGTACAAAAGCTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTGAAGAATTATGATGGTGATGTCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCATATGGTTGAGCTCAAGTCTGGTGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAGTACATACATGCAATAGCAGACTACAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTCATATCTCCATCTTGGTTGAAGTTATTCAATGCTAATGAATTTAATCAGTTACTTTCAGGTGGAAATTACGATATTGACATTGATGATTTGAAAAATAACACACGATACACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATCTTTTGGGAGGTGATTAAAGGTTTTGAACCAAAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGCTGTTCTCGTGCTCCATTACTCGGCTTCAAATATTTGCAGCCACCTTTTACTATCCATAAGGTTGCATGTGATGTCCCTCTTTGGGCAACACTTGGAGGACAAGATGTAGAGCGGCTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGCTTCCAACATACAAACGTCCAGGCACTTTGAGAACAAAGCTTCTGTATGCTATCAGTTCAAATGCCGGATTTGAACTTTCTTGA 3495 0.4023 MDAPRKHQVLLRGASAKEITRDDLLQKVSRERELRNYAKRAVAAALFIQRVWRRFKATKVVALQLQEEWETMVNHYSGAMTAIWISNNLLRPFLFFMTCFSTRHQKVHKKKIDSMKMCFTILLESLKSSDLKRNFCFLAVGTSEERRIWSYQARRLTSLGFLILQEFSECNSGAQDITIVTSLAMRVLVMLTDLKGWKGITDDNRLDADLAVKDLVQFMGSNKSGSYVSIARYISALDNYSSQTKITTQADEFFFITASTITLAVRPFHLTSFDVEGPGMLDVNHAAKQYVVYLLTIPWLVQHLPPVFLPALKHKSILFPCFQTLLILKENVLMEMSELVKSKILTSFKAIPPVGWALANIICLATENGNGSVSVDSGSFNHGLDYALYVQVVITLAESLITCLDNIGWVRKKKKALQTDVESSTQPVDMVLHEGEGTYESLMMSYTDQFRPVCQQWHLTNLLASINRDATNKAETLLSNSMECLGKLDLCDVALFYSNLLRIFSALSPIRCSLPVLNMLSFTPGFLVRLWCALEDSFFSGDRHISDNHTSENGRQKAFEKMQKQGSKDGANKWASVLHKFTGKSQTTTDCTNPSGSHSEPSRVNEDSSDVWDIEPMRHGPQGIPKDMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKIEQQRRIASMLNTLVYNGLSHVSGHHNRPLMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEILSANPKCDDSSASLSEGSVITVTPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVNESELMEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPTASARYLDNGLQMIEFLGRVVGKVLYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVKELSLDFTVTEESFGKRHMVELKSGGKDISVTNENKMQYIHAIADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNANEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPKERCMLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATLGGQDVERLPSASTCYNTLKLPTYKRPGTLRTKLLYAISSNAGFELS. 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04737 1164 Gene3D Hect, E3 ligase catalytic domain 1039 1163 - -
Seca2g04737 1164 Gene3D Hect, E3 ligase catalytic domains 798 1036 - -
Seca2g04737 1164 Gene3D Hect, E3 ligase catalytic domain 922 1001 - -
Seca2g04737 1164 MobiDBLite consensus disorder prediction 585 602 - -
Seca2g04737 1164 FunFam Putative Ubiquitin-protein ligase E3C 922 1001 - -
Seca2g04737 1164 SUPERFAMILY Hect, E3 ligase catalytic domain 796 1157 IPR035983 GO:0004842
Seca2g04737 1164 CDD HECTc 796 1162 IPR000569 GO:0004842
Seca2g04737 1164 Pfam HECT-domain (ubiquitin-transferase) 851 1164 IPR000569 GO:0004842
Seca2g04737 1164 MobiDBLite consensus disorder prediction 585 608 - -
Seca2g04737 1164 SMART hect_3 814 1164 IPR000569 GO:0004842
Seca2g04737 1164 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1164 IPR044611 GO:0000209|GO:0061630
Seca2g04737 1164 ProSiteProfiles HECT domain profile. 820 1164 IPR000569 GO:0004842
Seca2g04737 1164 FunFam E3 ubiquitin-protein ligase UPL7 1039 1163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04737 Seca-Chr2 133615125 133626176 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04737 K10588 - gmx:100527169 2029.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04737 2 133615125 133626176 Seca2g04737 2 133615125 133626176 ECH