Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04728 ATGAAGCTCCTTGACAAAGATTTTGCTCCTAACCAAACGGGAACAGTCAAAATCATCGCTCAAGAACCCGACGACCTTTGGATCCTTTACAACCTCATCTTCCCCGGCGACGTCGTCACCGCCGAAACCACCCGCAAAGTCCACCTCGAATCCTCCACCAAAAGCACAACCGCCTCACGTGTCAAACTCACCCTTCACCTCAAAGTCACGTGCCGAGACTTCCACAAAGACTCTTCTACCCTCCGTGTCCAAGGCCGCAACCTCGACGCTAACCAATACGTCGCCGCTGGGTCCTTCCACACATTCACCCTCGAAACAAACAAACCCTTCGAGCTTCGGAAAAAACTCTGGGGCCCACAAGCCATCGAGGCCATAAACGAAAGCATAGAAAATTCCACGTCATCAGTTTCTAATTCTCCCGATGCTGACGTGGCCGTTGTTCTCCTTCAACAACACCAAGCCGAGATTTACTTGCTTGGAAAAGGCGTCACCACTCGCTGTTCCAAAATCGAAAATGTTGTCTTTTTAAGCTATTTCAAAAGTTTGCTTATTTCCAAGTCCCACATTGCTTGGTTTTATCGTGAGGTTTTTTCCGCTTTCGTGAAACACGTGGATTTCGACGTTGTTAAGAATGTGGTCATAGCGAGCGATGCAACGAGGAACAAAGACGAGTTTCGTAGGTTTCTTCTTTCCGAAGCGAAGAGGTTGAGGATGAAGTGGATTGAAGAGAACAAGTCACGGATTGTGGTTGTGGGGTCAGGGGGGAAAAATAATAAGGGTGATTTGGGGGAAATTTTGGGTGACAGTGCGGTGATGAATGTGATAAAGGACAGCAAGGTTGGGATGGAGATTAGGGCTTTTAGGGATTTGTGGGACATGGTGTCAAACAATTCGGATCGTGCTTGTTATGGTCCGAAGAATGTGGAGAGTGCGAATGAGATGAGGGCTATTGAGACGCTTTTGATCACTGATGAGCTTTATAGGAATGAAGAGATTGGAACAAGGCAAAGGTATGCGGGTTTGGTGAAAGCGGTGAAAGAGAATGGGGGAAAGGCTTTGGTTTATTCATCGATGCATGTTTCGGCACCACAGCTAGCACAGCTTACGGGCGTTGCAGCTATTCTCAGGTTTCCCTTGCCTGATCTTGAAGACATGGATTATGGTGTTTAG 1170 0.4752 MKLLDKDFAPNQTGTVKIIAQEPDDLWILYNLIFPGDVVTAETTRKVHLESSTKSTTASRVKLTLHLKVTCRDFHKDSSTLRVQGRNLDANQYVAAGSFHTFTLETNKPFELRKKLWGPQAIEAINESIENSTSSVSNSPDADVAVVLLQQHQAEIYLLGKGVTTRCSKIENVVFLSYFKSLLISKSHIAWFYREVFSAFVKHVDFDVVKNVVIASDATRNKDEFRRFLLSEAKRLRMKWIEENKSRIVVVGSGGKNNKGDLGEILGDSAVMNVIKDSKVGMEIRAFRDLWDMVSNNSDRACYGPKNVESANEMRAIETLLITDELYRNEEIGTRQRYAGLVKAVKENGGKALVYSSMHVSAPQLAQLTGVAAILRFPLPDLEDMDYGV. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04728 389 PANTHER PELOTA 1 386 IPR004405 GO:0070481|GO:0070966|GO:0071025
Seca2g04728 389 FunFam Protein pelota homolog 1 131 - -
Seca2g04728 389 SUPERFAMILY Translational machinery components 140 279 - -
Seca2g04728 389 Gene3D - 277 388 IPR029064 -
Seca2g04728 389 SMART eRF1_1_2 1 130 IPR005140 -
Seca2g04728 389 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 129 IPR038069 -
Seca2g04728 389 Pfam eRF1 domain 1 1 128 IPR005140 -
Seca2g04728 389 NCBIfam mRNA surveillance protein pelota 8 379 IPR004405 GO:0070481|GO:0070966|GO:0071025
Seca2g04728 389 SUPERFAMILY L30e-like 273 379 IPR029064 -
Seca2g04728 389 FunFam Protein pelota homolog 279 388 - -
Seca2g04728 389 Pfam eRF1 domain 3 283 379 IPR005142 -
Seca2g04728 389 Gene3D eRF1 domain 2 142 275 IPR042226 -
Seca2g04728 389 Gene3D Pelota, domain A 1 131 IPR038069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04728 Seca-Chr2 133494349 133501340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04728 K06965 - gmx:100803618 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04728 2 133494349 133501340 Seca2g04728 2 133494349 133501340 ECH