Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04708 ATGCAAATTGTTGGTGGTCATCATAGCGAGATATGGTCCTTGGACATTGATCCGGGTGAAAGATATCTGGTCACTGGTTCTGCAGACAAGGAACTTCGTTTTTATACGATCAAGCATGAGTCTGTGGATGGGGAGTCTGGAGATGGTGGTGAAGATTCTTCCCTTCAGAATAAATGGGAAATTTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGCAAGGATAGAGTTGCAATGGTGCAGTTCAACAAGTCAGGGAATCTGCTAGCTTGTCAAGTTGCAGGAAAGACGGTAGAAATTTACCGTGTATTGGATGACACTGAAGCAAAGCGTAAAGCAAAGCGCAGGGTTAACCGTAAAAAAGAGAAGAAACATAGCAAAGAGGCTTTGGAGGGAACTGAAAATGGGGACAGGAATAATGAGAACAAAGGAGATAATGCTACTGTGAATCAAGGACCCATTGAAACAAGTAACCACACTGTTACTGTCCCCGATGTTTTTAAGCTGTTGCATACTATTAGGGCTAGCAAAAAGATATGCTCCATTACTTTCTGTCCAATCACACCAAAGAATTCACTAGCTGGTTTAGCATTGTCCTTGAACAATAATCTACTTGAGTTTTACTCCGTTGAAAGTAGTGAAACAAGAAAAACACTTGCTATTGATCTTCAAGGGCACCGTTCTGATATTAGAAGTGTCACACTTAGTTCAGACAACACTTTCCTGTTGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAAGCACCGGTTCTTGCCTAAGGACCATTGATTCTGGGTACGGACTGTGCAGTTTAATTCTTCCCACTAACAAGTATGGACTTGTCGGAACTAAAGATGGAACCATAGAGGTGATTGACATTGGAAGTGGCACTTGTATTGAAGTAATTGAAGCTCATGGTGGCTCTCTGCGCTCAATTACTGCCTTACCGGATAAAACTGGTTTTGTCACAGGAAGTGCAGATCATGATGTAAAGTTTTGGGAGTACCAAATTAAGCAAAAACCTGGTCAAGCTACTAAGCAACTCATTGTGTCAAATGTCAGGACTATGAAAATGAATGATGATGTTCTTGTGGTTGCAATTAGCCCTGATGCCAAATATATTGCGGTTGCTCTGTTGGATAGTACTGTGAAGGTTCACTTTGTAGACACTTTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTCCTGTGTATGGATATCTCATCAGATGGTGATTTAATTGTGACTGGCTCTGCAGATAAAAATATAAAGATTTGGGGTTTGGATTTTGGTGACTGTCATAAATCTATTTTTGCACATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCACTGTTGGAAAGGATCGCCTAGTGAAATATTGGGATGCTGATAAATTTGAGCTGTTGTTAACTCTCGAAGGGCATCATGCAGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATTATCACTGGATCTCATGATCGTTCCATCCGCCGCTGGGACCGTACAGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCATTTGAAAACAAGTATACGCCGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTGGCTGGAAAAAAAACTCAGGAAACCCTTACTGCAACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGCTGAAAAAAAGCGCATTGCTGAACATCAGGAGGAGAAAAATAACAGAAATACTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGATTATGTTCTAAGTGCATTTTCAGATGTTCACTCGAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCATACTTGAAAGAATGGACTTCATATTCTGAAAAGGTTGAGCTTGTTTGTAGGATAGGTACACTGCTGTTGCAGACACATTACAATCAGCTGCTTGCCACGCCAGCTGCCAGACCTGTCTTGACTGTTTTCAGTGACATTTTTTATGAACGGGTCAAGGGATGGAAAGATATCTTTGGTTTTAACCTTGCAGCTATGGATCATATCAAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGAGCAAAACTGCTTGAGATACGTGCTCAACAATCCAAACGTTTACAAGAGAGGTCGGATACTGGAGAAGTAAAGCGGAAGAAGAAGAAGACATAG 2289 0.4093 MQIVGGHHSEIWSLDIDPGERYLVTGSADKELRFYTIKHESVDGESGDGGEDSSLQNKWEILRHFGEIQRQSKDRVAMVQFNKSGNLLACQVAGKTVEIYRVLDDTEAKRKAKRRVNRKKEKKHSKEALEGTENGDRNNENKGDNATVNQGPIETSNHTVTVPDVFKLLHTIRASKKICSITFCPITPKNSLAGLALSLNNNLLEFYSVESSETRKTLAIDLQGHRSDIRSVTLSSDNTFLLSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEVIDIGSGTCIEVIEAHGGSLRSITALPDKTGFVTGSADHDVKFWEYQIKQKPGQATKQLIVSNVRTMKMNDDVLVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFTVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIITGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYTPKEEIPEEGAVALAGKKTQETLTATDLIIERLDIAEAEKKRIAEHQEEKNNRNTAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKEWTSYSEKVELVCRIGTLLLQTHYNQLLATPAARPVLTVFSDIFYERVKGWKDIFGFNLAAMDHIKQMMASRSDALFHDARAKLLEIRAQQSKRLQERSDTGEVKRKKKKT. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04708 762 Gene3D - 154 264 IPR015943 GO:0005515
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 472 - -
Seca2g04708 762 Coils Coil 103 129 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 4 38 IPR001680 GO:0005515
Seca2g04708 762 PRINTS G protein beta WD-40 repeat signature 501 515 IPR020472 -
Seca2g04708 762 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Seca2g04708 762 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Seca2g04708 762 SUPERFAMILY WD40 repeat-like 4 185 IPR036322 GO:0005515
Seca2g04708 762 FunFam WD repeat-containing protein 3 isoform A 468 526 - -
Seca2g04708 762 Gene3D - 1 139 IPR015943 GO:0005515
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 432 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 335 IPR001680 GO:0005515
Seca2g04708 762 MobiDBLite consensus disorder prediction 743 762 - -
Seca2g04708 762 Gene3D - 265 467 IPR015943 GO:0005515
Seca2g04708 762 CDD WD40 222 514 - -
Seca2g04708 762 FunFam Transducin family protein / WD-40 repeat family protein 153 266 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 1 36 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 433 472 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 256 293 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 350 388 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 475 514 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 391 430 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 296 335 IPR001680 GO:0005515
Seca2g04708 762 SMART WD40_4 215 253 IPR001680 GO:0005515
Seca2g04708 762 FunFam WD repeat domain 3 267 459 - -
Seca2g04708 762 SUPERFAMILY WD40 repeat-like 4 519 IPR036322 GO:0005515
Seca2g04708 762 MobiDBLite consensus disorder prediction 141 156 - -
Seca2g04708 762 Coils Coil 579 599 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 262 IPR001680 GO:0005515
Seca2g04708 762 Gene3D - 471 522 IPR015943 GO:0005515
Seca2g04708 762 MobiDBLite consensus disorder prediction 123 140 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 481 IPR001680 GO:0005515
Seca2g04708 762 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 760 - -
Seca2g04708 762 MobiDBLite consensus disorder prediction 110 156 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 4 38 - -
Seca2g04708 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Seca2g04708 762 Pfam WD domain, G-beta repeat 297 334 IPR001680 GO:0005515
Seca2g04708 762 Pfam WD domain, G-beta repeat 396 429 IPR001680 GO:0005515
Seca2g04708 762 Pfam WD domain, G-beta repeat 477 514 IPR001680 GO:0005515
Seca2g04708 762 Pfam WD domain, G-beta repeat 222 253 IPR001680 GO:0005515
Seca2g04708 762 Pfam WD domain, G-beta repeat 3 35 IPR001680 GO:0005515
Seca2g04708 762 Pfam Dip2/Utp12 Family 617 717 IPR007148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04708 Seca-Chr2 133226610 133233557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04708 381 523 Miscellaneous Gene Families AT5G08390 25.175 8.77e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04708 K14556 - gmx:100775810 1372.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04708 2 133226610 133233557 Seca2g04708 2 133226610 133233557 ECH