Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04616 ATGGCAAAGCTAATCCATTTCCTCCCTCCCCTCTTCCTCATTTTCCAAACAATTTCAGCTCAAACACCATCAGTGGCTCCAGCACCAACAGGACCCACCAACATCACCAAAGTCCTAGAAAAAGCAGGGCAATTCACAACTTTCATTAAGCTACTCAAAGCTACCCAGGTAGCTGATCGCATCAATTCTCAGCTCAACAACTCAAACCAAGGCCTAACCATCTTTGCACCCACAGATAATGCATTCTCAAGTCTAAAAGCAGGGACCTTGAACTCTATCAGCTCACAAGACCAATTGCAGCTGTTACAGTTCCATATCCTCCCTACTACAATTTCTGCTCAAACACCAGCAGTGGCTCCAGCACCAGCAGGACCCACCAACATCACCAAAGTCCTAGAAAAAGCAGGGCAATTCACAACTTTCATTAAGCTACTCAAAGCTACCCAGGTAGCTGATCGCATCAATTCCCAACTCAACAACTCAAATCAAGGCCTAACCATCTTTGCACCCACTGATAATGCATTCTCAAGTCTAAGAGCAGGGACTTTGAATTCCATCAGCTCACAAGACCAATTGCAGCTGTTACAGTTCCATATCCTCCCTACTCTTTACACCATGTCACAGTTTCAAACTGCCAGTAACCCCTTACACACGCAAGCTGGAAACAGTGACGATGGTGAATACCCTTTGAATGTTACAACCTCAGGAAATCAAGTGAATGTAACAACAGGGGTGGTTGATACAACTGTGTCCAACACTATTTACACTGATAACCAGCTTGCGGTGTATCAGGTCGATAAGGTACTGCTTCCTATGGCACTTTTTGGTCAACCGCCGACCGCCGCTCCGGCAGAGGCTCCGGCGCCGACCAAGCCGGAGAAGAATGTCCGGGCATCGGATTCTCCATCAGGGTCGTCGGATACTTCGGTTGATAGTTCGAGTGCAGTGGGTCTGAATAGCCAGACAGTTAAAGGTGTTATCTTGATTGTTGCCATCATTGTTTCTTGCTTGTGA 1014 0.4675 MAKLIHFLPPLFLIFQTISAQTPSVAPAPTGPTNITKVLEKAGQFTTFIKLLKATQVADRINSQLNNSNQGLTIFAPTDNAFSSLKAGTLNSISSQDQLQLLQFHILPTTISAQTPAVAPAPAGPTNITKVLEKAGQFTTFIKLLKATQVADRINSQLNNSNQGLTIFAPTDNAFSSLRAGTLNSISSQDQLQLLQFHILPTLYTMSQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNVTTGVVDTTVSNTIYTDNQLAVYQVDKVLLPMALFGQPPTAAPAEAPAPTKPEKNVRASDSPSGSSDTSVDSSSAVGLNSQTVKGVILIVAIIVSCL. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04616 337 Pfam Fasciclin domain 44 114 IPR000782 -
Seca2g04616 337 Pfam Fasciclin domain 137 271 IPR000782 -
Seca2g04616 337 SUPERFAMILY FAS1 domain 31 113 IPR036378 -
Seca2g04616 337 ProSiteProfiles FAS1/BIgH3 domain profile. 125 269 IPR000782 -
Seca2g04616 337 SUPERFAMILY FAS1 domain 124 271 IPR036378 -
Seca2g04616 337 Gene3D FAS1 domain 115 272 IPR036378 -
Seca2g04616 337 Gene3D FAS1 domain 15 114 IPR036378 -
Seca2g04616 337 MobiDBLite consensus disorder prediction 280 315 - -
Seca2g04616 337 MobiDBLite consensus disorder prediction 296 315 - -
Seca2g04616 337 FunFam Fasciclin-like arabinogalactan protein 11 109 271 - -
Seca2g04616 337 ProSiteProfiles FAS1/BIgH3 domain profile. 32 108 IPR000782 -
Seca2g04616 337 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 111 325 IPR045003 -
Seca2g04616 337 SMART fasc_3 166 272 IPR000782 -
Seca2g04616 337 SMART fasc_3 73 158 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04616 Seca-Chr2 132199466 132206055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04616 - - mtr:11427146 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04616 2 132199466 132206055 Seca2g04616 2 132199466 132206055 ECH