Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04557 ATGGTAAGATTTTTGTATTACTTTCTTGGCTTGTTCCTTACATCTTTTGGACAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGTGATGTTGATGGAAGTCGTATTGTTGTGGAATTTGCGAAAGGGGTTCCCCGTGGTTCCCGGGAATATTTGGGTCGAGGTCCACCTCCTGGAACTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGTGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGTAGACATGCACGAAGTGTTTCACGTTCACCGGTCAGGTCACGTTCTCCGAGGCGTGGCAGAAGCCGAGATCGAAGTTACAGTCCAGCCCGCAGCTACAGCCGATCAAGATCCCCTGTCAGAAGAGATCGAAGCCCTGTTCCTGAAGATAGATCAAGGAGTCCTCAGCCCTCCAAGGCAAGGAGGCATAGTCCATCTCCTGATCAAGGCAGCCCACAGAAGAGAAGTGACACCTCTCCAGGTAATGAAAGGATGGTCACCACCCAAGATGGGTCTGACTACAGCGATGGTCCTAGAGCAAAGAGTAGAAGCCCTGCAAGGGACCACGATGATAGGGGCTATGATAGCCCTAAAGATAATGGGCGCAGCCGCAGCCGCAGCCCTAGCCGCAGCCCTAGGGATGATGACAGGAGCCCTATTGATGATGAAGATGACAACCACCGCCACTCACAGTCACCTTAG 798 0.5075 MVRFLYYFLGLFLTSFGQEFSDPRDADDARYNLDGRDVDGSRIVVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPVRSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPVPEDRSRSPQPSKARRHSPSPDQGSPQKRSDTSPGNERMVTTQDGSDYSDGPRAKSRSPARDHDDRGYDSPKDNGRSRSRSPSRSPRDDDRSPIDDEDDNHRHSQSP. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04557 265 Pfam Zinc knuckle 90 107 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 Pfam Zinc knuckle 69 84 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 SUPERFAMILY Retrovirus zinc finger-like domains 60 108 IPR036875 GO:0003676|GO:0008270
Seca2g04557 265 ProSiteProfiles Zinc finger CCHC-type profile. 69 84 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 ProSiteProfiles Zinc finger CCHC-type profile. 91 107 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 MobiDBLite consensus disorder prediction 110 132 - -
Seca2g04557 265 MobiDBLite consensus disorder prediction 208 265 - -
Seca2g04557 265 SUPERFAMILY RNA-binding domain, RBD 19 57 IPR035979 GO:0003676
Seca2g04557 265 MobiDBLite consensus disorder prediction 103 265 - -
Seca2g04557 265 MobiDBLite consensus disorder prediction 133 169 - -
Seca2g04557 265 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 SMART c2hcfinal6 91 107 IPR001878 GO:0003676|GO:0008270
Seca2g04557 265 MobiDBLite consensus disorder prediction 171 207 - -
Seca2g04557 265 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 60 88 - -
Seca2g04557 265 Gene3D - 60 88 - -
Seca2g04557 265 Gene3D - 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04557 Seca-Chr2 131700620 131704358 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04557 K12896 - gmx:100813237 337.035