Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04542 ATGGTCATGGCCATGGATCACGGCCAACGCCCTCTGTCCGAACCTGCCACCCCAAGGTCCCCAACCACCCCTAGGCCCACCCTCTTCCTCTCCACTTCCGGCAAGGCTCTCCTCGTTTCCAACTCCAACAAATCCCTTGTCCTCTCTAATTCCGGCAAGCGTCTTGACAGCAAGAAGAAGTATGTCAAGCAGGTCACCGGCCGCCACAACGACACCGAACTCCACCTCGCCGCCCAGCGCGGCGACGTCGCCTCCGTCAGGCATATCCTCGCCGAGATTGACGCTCAGATGATGGGAACCCTAAGCGGTGCCGAGTTTGACGCCGAGGTTGCTGATATTAGGTCCGCGATTGTCAACGAGTTCAACGAGTTGGGAGAAACCGCTCTCTTCACCGCCGCTGAGAAAGGCCACATTGATGTCGTCAAGGAACTACTTCCTTATACTACCAAAGAAGCCCTCTCCTTCAAAAACCGCTCCCGCTTTGATCCCTTGCATGTTGCTGCTAGCCAAGGTCATCAAGCCATTGTGGAGGTGCTATTAGACCATGATCCAGAGCTAATCAAGACGTTTGCACAGTCAAATGCAACTCCTCTTGTCACTGCATCTACAAGAGGGCATGCGAATGTTGTTGATTTGTTGCTGTCACGGGATCCTAGTCAGTTAGAGATAGCTAGATCCAATGGAAAGAATGCACTCCATTTAGCTGCCCGCCAAGGACATGTTGATGTTGTGAAGATATTGTTAAGGAAGGACCCACAGCTTGCTCGAAGGACGGATAAGAAAGGACAAACTGCATTGCATATGGCTGTTAAAGGGGTTAGCGTTGAAGTGGTGAAGTTGCTTCTTGATGCAGATGCTGCAATTGTCATGCTTCCTGATAGGTTTGGCAACACTGCATTGCATGTAGCCACCAGGAAGAAGAGGAAATGCATTAGTTATGACTCTCAAAAAATTATGCAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATGCCCTGACTAGAGACCACAAAACAGCTCTTGACCTTGCAGAAGCGCTTCCAATATCTGAAGAAATTTTGGAGATCAAAGAGTGCTTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTTAACCAGCCAAGGGATGAGCTAAGGAAAACCATGACACAAATTAAGAAGGATGTTTATTTTCAGCTTGAACAAACTAGAAAAACAAACAAGAATGTGAATGGGATTGCTAAGGAGCTACGCAAGTTGCACAGAGCTGGGATCAACAATGCTACCAACTCAGTAACAGTGGTTGCTGTGCTATTTGCAACTGTTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGTGATGATGATACTGGGAAGGCTGTGATGGTACACACTGTATCTTTCAAGGCCTTCTTCCTATCTAATGCTATTGCACTCTTTACTTCATTGGCTGTGGTGGTGGTTCAAATCACAATTGTTAGAGGGGAGATAAAGTCTGAGAGGAGGGTTGTGGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGCACCTCAGTTTCATTCATTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCGAGTGGGCTGCAATCCTTGTTACTGTTATTGGGGGGATTATAATGGGTGGTGTTCTTGGTACCATGACATATTATGTGGTGAAATCCAAACGTTTCCGAAGAGAGAGGAATGAAGATACCTTTCCAGAGAAGATGAAGAAACAATTGACAGGCTTACGGGGTGATTCTCCCCTACAATCGGCAATCCGAGCTGGAAATTTAGAATTGGTGCTGGAAATCATCTCTGAGAATCAAGATGAAGATTTAAAGGAGTTGCTTTCAATGAAGAATAACTCTGGTGAAACTGCCTTATATATTGCTGCTGAAAATGGTCATCTTGATATAGTGAAGGAATTGATCAGATGTCATGATATTGGGTTGGCCAGCTTGAAAGCTAGAAATGGATTCGATGCATTCCATGTTGCTGCTAAAAATGGAAACTTGGAGATATTAAAGGTCCTCATGGAGGCCATTCCTGGAATTTCAATGACTGTTGATCTGTCAAACACTACTGCATTGCACACTGCTGCAGCACAAGGACATATTCAAGTAGTAAATTTTCTCTTGGAGAAATGTAGCAACCTGATTACTATTGCAAAAAGCAATGGGAAAACTGTGTTTCACTCTGCTGCAAGAAATGGCCATGTGGAGGTCATCAAGGCCCTTCTAAGCAGAGAACCTGAAATTGCAACCAGAACTGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAATCTTGAGTTGGTGGAAGAGCTTGTGAAACTGAATCCATCTTTGGCTAATATCGTGGATGCCAAGGGAAACACTGCACTACATATAGCAACCCGGAAGGGCCGTCTACAGATTGTTCAGAAGCTACTAGATTGCAAAGAAATAGACACTGATGTTATTAATAGATCTGGAGACACTGCTTTGGATACTGCAGAGAGAAGTGGTCACTTAGACATTGCTAACTTCCTGCAAGATCATGGAGCTCGAAATGCTAGGTCCATCAAGTCAACTACTACAAACACAGCCCTTGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACATTTAAAACACAAAGACGTATGAAAGGCATAGCAAAGAGAATTAACAAGATGCATGCTGAGGGGCTCAACAATGCAATCACCTCCAATACTGTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCAGGCCAGTATCCTCAGAACCCAACTAAACTCGCTCCAGAATTGTCTCTTGGGGAAGCAAATATTGCTCCTAATATTGCATTTGAGATATTCATAATCTTTGATTCTACAGCCCTTTTCATATCATTGGCTGTTGTAGTTGTCCAAACATCAATAGTTGTTATTGAGAGGAAAGCAAAGAAACAAATGACAGCAGTTATAAATAAGTTGATGTGGATAGCCTGTGTGCTAATTTCTGTGGCATTCCTTGCAATGTCATACATAATTGTGGGAGATCAAAAAGAGCTAGCTATAGCTGCCACAGCTCTAGGAACAGTGATAATGGCAGCTACTCTAGGAACACTCTGTTATTGGGTGATTGCTCATCGCCTTGAGGCATCCAGATTGCGAAGTCTTAGAACAATGACAAGTAGTAGACAGTCATTGTCTATGTCAGTGTTGTCAGGTTCAGAGAATGAGTATAAGACAGTGTATGCAATATAA 3285 0.4423 MVMAMDHGQRPLSEPATPRSPTTPRPTLFLSTSGKALLVSNSNKSLVLSNSGKRLDSKKKYVKQVTGRHNDTELHLAAQRGDVASVRHILAEIDAQMMGTLSGAEFDAEVADIRSAIVNEFNELGETALFTAAEKGHIDVVKELLPYTTKEALSFKNRSRFDPLHVAASQGHQAIVEVLLDHDPELIKTFAQSNATPLVTASTRGHANVVDLLLSRDPSQLEIARSNGKNALHLAARQGHVDVVKILLRKDPQLARRTDKKGQTALHMAVKGVSVEVVKLLLDADAAIVMLPDRFGNTALHVATRKKRKCISYDSQKIMQIVNELLLLPDTNVNALTRDHKTALDLAEALPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNKNVNGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAALFTVPGGDDDTGKAVMVHTVSFKAFFLSNAIALFTSLAVVVVQITIVRGEIKSERRVVEVINKMMWLASVCTSVSFIAASYIVVGRRSEWAAILVTVIGGIIMGGVLGTMTYYVVKSKRFRRERNEDTFPEKMKKQLTGLRGDSPLQSAIRAGNLELVLEIISENQDEDLKELLSMKNNSGETALYIAAENGHLDIVKELIRCHDIGLASLKARNGFDAFHVAAKNGNLEILKVLMEAIPGISMTVDLSNTTALHTAAAQGHIQVVNFLLEKCSNLITIAKSNGKTVFHSAARNGHVEVIKALLSREPEIATRTDKKGQTALHMAVKGQNLELVEELVKLNPSLANIVDAKGNTALHIATRKGRLQIVQKLLDCKEIDTDVINRSGDTALDTAERSGHLDIANFLQDHGARNARSIKSTTTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAITSNTVVAVLIATVAFAAIFNVPGQYPQNPTKLAPELSLGEANIAPNIAFEIFIIFDSTALFISLAVVVVQTSIVVIERKAKKQMTAVINKLMWIACVLISVAFLAMSYIIVGDQKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTMTSSRQSLSMSVLSGSENEYKTVYAI. 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 827 852 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 793 815 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 793 815 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 657 679 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 622 644 IPR002110 GO:0005515
Seca2g04542 1094 Gene3D - 720 894 IPR036770 -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 691 723 IPR002110 GO:0005515
Seca2g04542 1094 Gene3D - 39 183 IPR036770 -
Seca2g04542 1094 SUPERFAMILY Ankyrin repeat 585 851 IPR036770 -
Seca2g04542 1094 SUPERFAMILY Ankyrin repeat 71 351 IPR036770 -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 159 186 - -
Seca2g04542 1094 FunFam Ankyrin repeat-containing protein ITN1 220 350 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 657 679 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 261 293 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 759 781 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 227 250 - -
Seca2g04542 1094 FunFam Ankyrin repeat-containing protein ITN1 45 185 - -
Seca2g04542 1094 SMART ANK_2a 622 650 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 159 188 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 657 686 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 69 98 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 691 721 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 827 857 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 759 788 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 583 612 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 124 152 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 793 823 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 193 222 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 725 754 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 295 335 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 227 256 IPR002110 GO:0005515
Seca2g04542 1094 SMART ANK_2a 261 290 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Domain of unknown function 421 525 IPR026961 -
Seca2g04542 1094 Pfam Domain of unknown function 907 1022 IPR026961 -
Seca2g04542 1094 Gene3D - 559 719 IPR036770 -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 759 781 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 725 752 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 622 644 - -
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 723 781 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 583 645 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 259 312 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 790 853 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 654 714 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 193 251 IPR002110 GO:0005515
Seca2g04542 1094 Pfam Ankyrin repeats (3 copies) 74 183 IPR002110 GO:0005515
Seca2g04542 1094 Gene3D - 184 392 IPR036770 -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 827 852 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 691 718 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat profile. 159 186 IPR002110 GO:0005515
Seca2g04542 1094 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g04542 1094 ProSiteProfiles Ankyrin repeat region circular profile. 261 288 - -
Seca2g04542 1094 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 43 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04542 Seca-Chr2 131322454 131333629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04542 13 569 Miscellaneous Gene Families AT3G09550 73.721 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04542 - - sind:105161491 1359.36